DRSC/TRiP Functional Genomics Resources

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Protein Alignment nxf2 and Nxf7

DIOPT Version :10

Sequence 1:NP_524111.3 Gene:nxf2 / 39843 FlyBaseID:FBgn0036640 Length:841 Species:Drosophila melanogaster
Sequence 2:NP_570958.1 Gene:Nxf7 / 170722 MGIID:2159343 Length:620 Species:Mus musculus


Alignment Length:574 Identity:125/574 - (21%)
Similarity:224/574 - (39%) Gaps:122/574 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   286 NMLHKIFSPLDVEIDLEVDGARIDTNNMWKLPEFENSQHWHAFMIPDPSHEFNQEVFFDFFFIRL 350
            |.:|.:.|.....:|...|..||    .:.:|:|.     .|..:.|.|::.:.| :|....|.:
Mouse   140 NSIHSLCSVPFTPVDFHCDKHRI----QFFVPDFR-----IASALKDISYKIHNE-YFQKIPIFV 194

  Fly   351 DPTLSNFYPCYYKYINTEHVFLVRNCFDQIAHLVNNCNLEMTIPTGDRIFRYYLRMNVSTVKQHH 415
            :|:::              .:.|:|.|.:  ..:....|.|.       .||.:..:...:|:..
Mouse   195 NPSVA--------------PYSVQNRFTK--EEMEQLKLAMR-------KRYDVSQHALCLKKLR 236

  Fly   416 VDPEECIQKAVSQCYVAQNRMLNLERFHSRECLKDVM--VSLSSPKILTYVLSVASRKFMTTCSE 478
            .||:           :.:|.:..:  .:.|.|:...:  :..:.||:|:                
Mouse   237 FDPD-----------LMKNNIHMI--LNHRSCMAATLQIIQENFPKLLS---------------- 272

  Fly   479 IRLCHNKVLVLDG-AHVLGMMGCLRAVDLSHNWVQDLSSIHSLGNLPLKSLVLHGNKLCRNYRLP 542
            :.|..||:..||. ..|:.....|:.::||.|.::.:..:..:..|.|:.|.|.||.||..:...
Mouse   273 LNLSSNKLFQLDSLIDVVKKAPQLKILNLSKNMLRTVWELEKMKGLKLEQLWLEGNPLCSTFPDR 337

  Fly   543 SEYVRAVKEVFPQLTTLDGVDLQTNPGQSLQKN---------FLCDTGAYELVGAFLENYLREFE 598
            |.|:|||.|.||:|:.|||..|......:.|:.         |:........|..||..|...::
Mouse   338 SSYIRAVLECFPELSYLDGRKLLLPTVMNTQERKLMKPCKDIFMGSEVIKNQVHRFLREYYLMYD 402

  Fly   599 NDEFRHNLYKYYSENSIFTLTCNYNVVQNHQTPKILQRLSKYNRHARNLRN-KDYSKASDGVFFG 662
            ::| |..|...|.:.:.|:||..:|     .....|..:..|.:...:::| |::......:.:.
Mouse   403 SEE-RQGLLNIYHDQACFSLTIPFN-----PNDPDLNSMYVYFKDENDMKNFKEFHIQRQLLKYT 461

  Fly   663 CTYIVEILLQLPRVTHDFHSLQTDVMHYNGKGAVIYVAGLLRDEPPSTRNGHGSKTDIGGVLLGF 727
            ...|||.|...|:..|.|.|.|.::...........|.||.::|        |:..:   .:..|
Mouse   462 KQDIVECLRGFPQTLHAFSSFQVNICFQMETMLCFSVCGLFKEE--------GTPKE---CVRAF 515

  Fly   728 SRQFVVTFDEANLGLGKRARRLKIANERLHITNPSKTAIRNAFSVNFPDPSERQAEEDSLDVKDH 792
            .|.|:.....:|         :.|.|::|.:.|||...|.:||.:  |.|:         ...:.
Mouse   516 MRIFIALLGSSN---------MYIVNDQLFVRNPSSEEINSAFVI--PSPT---------SYSNF 560

  Fly   793 KLLLFQE----------VTGLISTWVTSIVEEADWDFERALKLFIQKNADHEIP 836
            ||:|.||          .:|:...|....:|:..||:.||.::|.......:||
Mouse   561 KLVLSQEQQRMVQAFSTQSGMKLEWSQKCLEDNKWDYARAAEVFTMLQTKCKIP 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
nxf2NP_524111.3 PPP1R42 <206..284 CDD:455733
leucine-rich repeat 434..474 CDD:275382 6/41 (15%)
leucine-rich repeat 475..500 CDD:275382 6/25 (24%)
leucine-rich repeat 501..524 CDD:275382 4/22 (18%)
leucine-rich repeat 525..555 CDD:275382 14/29 (48%)
TAP_C 779..841 CDD:197882 15/68 (22%)
Nxf7NP_570958.1 Tap-RNA_bind 122..201 CDD:462696 16/84 (19%)
leucine-rich repeat 227..269 CDD:275382 6/54 (11%)
LRR <266..>355 CDD:443914 30/104 (29%)
leucine-rich repeat 270..295 CDD:275382 7/40 (18%)
leucine-rich repeat 296..319 CDD:275382 4/22 (18%)
leucine-rich repeat 320..350 CDD:275382 14/29 (48%)
NTF2_like 393..539 CDD:471850 36/171 (21%)
TAP_C 558..619 CDD:197882 15/57 (26%)
Blue background indicates that the domain is not in the aligned region.

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