DRSC/TRiP Functional Genomics Resources

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Protein Alignment LIMK1 and Y105C5A.24

DIOPT Version :10

Sequence 1:NP_002305.1 Gene:LIMK1 / 3984 HGNCID:6613 Length:647 Species:Homo sapiens
Sequence 2:NP_502888.2 Gene:Y105C5A.24 / 190882 WormBaseID:WBGene00013643 Length:478 Species:Caenorhabditis elegans


Alignment Length:340 Identity:93/340 - (27%)
Similarity:147/340 - (43%) Gaps:52/340 - (15%)


- Green bases have known domain annotations that are detailed below.


Human   299 IDRSP-GAGSLGSPAS--QRK----DLGRSESLRVVCRPHRIFRPSDLIHGEVLGKGCFGQAIKV 356
            :||.| .:.|.|.||.  |||    ||..:..:..: .|:.|    |.::...||||.||...|.
 Worm     1 MDRKPSSSSSTGPPAPVIQRKTRDSDLCLTSDIPKI-PPNCI----DELNSHFLGKGTFGVVEKT 60

Human   357 THRETGEVMVMKELIRFDEETQRTFLK-EVKVMRCL-EHPNVLKFIGVLYKDKR--LNFITEYIK 417
            .:|:|.:.......|::...|..:.|| |.|.|..| .|.|::|..| :|:..|  ...:.||:.
 Worm    61 KYRKTRDDTYRPAAIKYASATHLSILKREAKHMWNLRNHVNIIKIYG-MYESHRNGQGLVMEYMD 124

Human   418 GGTLRGIIKSMDS-QYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLV-RENKNVVVADFG 480
            .|.:..:|....: :|......|:...::|.:.:.||.:.|||||...|.|: ..::.:.:.|||
 Worm   125 CGCVADLIYDRKNIEYKMDHVASWMYQLSSAVNFFHSKDQIHRDLKLQNMLLSHHHRTLKICDFG 189

Human   481 LARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGR 545
            .             ..|:.:.....|    |:|..||||:.....|:.|.|:||.||::.::|.|
 Worm   190 T-------------FTSIHQSMTSNR----GSPITMAPEIFRCEPYNMKADIFSIGIIMWQMIAR 237

Human   546 VNADPDYLPRTMDFGLNVRGFLDRYCPPN-------CPPSFFPITVRCCDLDPEKRPSFVKLEHW 603
                 |: |.||:  :.:..||......|       |.|.......||...:|..||:......:
 Worm   238 -----DH-PYTMN--MPITPFLYNVATRNLRPHEIECNPILSNFYKRCWSDNPASRPTSADCVEY 294

Human   604 LETLRMHLA-GHLPL 617
            ...||.... |::||
 Worm   295 FRCLRSEYPNGNVPL 309

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIMK1NP_002305.1 LIM1_LIMK1 5..77 CDD:188846
LIM 84..138 CDD:413332
PDZ_LIMK-like 160..258 CDD:467236
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 260..319 11/26 (42%)
STKc_LIMK1 345..611 CDD:271123 75/278 (27%)
Y105C5A.24NP_502888.2 Protein Kinases, catalytic domain 49..287 CDD:473864 72/263 (27%)
Blue background indicates that the domain is not in the aligned region.

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