DRSC/TRiP Functional Genomics Resources

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Protein Alignment LIMK1 and mom-4

DIOPT Version :10

Sequence 1:NP_002305.1 Gene:LIMK1 / 3984 HGNCID:6613 Length:647 Species:Homo sapiens
Sequence 2:NP_492620.1 Gene:mom-4 / 172842 WormBaseID:WBGene00003396 Length:536 Species:Caenorhabditis elegans


Alignment Length:360 Identity:89/360 - (24%)
Similarity:149/360 - (41%) Gaps:63/360 - (17%)


- Green bases have known domain annotations that are detailed below.


Human   286 SSARQKPVLRSCSIDRSPGAGSLGSPASQRKDLGRSESLRVVCRPHRIFRPSDLIHGEVLGKGCF 350
            :|::.||  .|.|...||...::.......:|.|...::.:   |....:..|.::...||||.:
 Worm     3 NSSQSKP--SSSSSSHSPSPAAITPTQRTTRDSGLCSTIDI---PEIQAQCIDNLNSHYLGKGTY 62

Human   351 GQAIKVTHRETGEVMVMKELIRFDEET-QRTFLKEVKVMRCL-EHPNVLKFIGVLYKDKR--LNF 411
            |...|..:|:|.:.......|::..:. ..|.::|.|||..| .|||::|..| |||..|  ...
 Worm    63 GLVEKTRYRKTRQDDFRPAAIKYSSQLHMATLIREAKVMWDLRNHPNIIKIYG-LYKSPRNGQGV 126

Human   412 ITEYIKGGTLRGII-------KSMDSQYPWSQRVSFAKDIASGMAYLHSMNIIHRDLNSHNCLVR 469
            :.||:..|::..::       .::|....|..::|.|.|      :.||.:.:||||...|.|:.
 Worm   127 VMEYMDCGSMADLLYDRTHINYTIDHVASWMFQLSSAVD------FFHSNSQVHRDLKLQNMLLS 185

Human   470 EN-KNVVVADFGLARLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVF 533
            :. :.:.:.|||....|....|...                 |.|..||||:.....|:.|.|::
 Worm   186 DRYRTMKLCDFGTFTSMHQSMTSNR-----------------GTPITMAPEVFRCEQYNMKSDIY 233

Human   534 SFGIVLCEIIGRVNADPDYLPRTMDFGLNVRGFLDRYCPPN-------CPPSFFPITVRCCDLDP 591
            |.||::.:||.|.:      |...|  |:|.|.|......|       |.|.......:|.:.:.
 Worm   234 SIGIIMWQIIARNH------PYRRD--LSVPGLLYNVATANLRPQELECNPILSEFYKKCWNDNA 290

Human   592 EKRPSFVKLEHWLETLR-MHLAGHLPL------GP 619
            :.||:..:...:...|: .:..|.:||      ||
 Worm   291 DIRPTSSECVEYFTLLKDEYPNGSVPLSDSSTNGP 325

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LIMK1NP_002305.1 LIM1_LIMK1 5..77 CDD:188846
LIM 84..138 CDD:413332
PDZ_LIMK-like 160..258 CDD:467236
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 260..319 8/32 (25%)
STKc_LIMK1 345..611 CDD:271123 73/285 (26%)
mom-4NP_492620.1 Protein Kinases, catalytic domain 57..303 CDD:473864 72/277 (26%)
Blue background indicates that the domain is not in the aligned region.

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