DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and PDR12

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_015267.1 Gene:PDR12 / 856049 SGDID:S000005979 Length:1511 Species:Saccharomyces cerevisiae


Alignment Length:758 Identity:179/758 - (23%)
Similarity:294/758 - (38%) Gaps:207/758 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MSDSDSKRIDVEAPERVEQHELQVMPVGSTIEVPSLDSTPKLSKR-----NSSERSLPLRSYSKW 60
            |.:..::..|.....|.|..|        .:..|::|....::::     |..:.::|.      
Yeast   803 MPELGTENADARTASREEMME--------ALNGPNVDLEKVIAEKDVFTWNHLDYTIPY------ 853

  Fly    61 SPTEQGATLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQ 125
                .|||                   ::::::..|.::||.:.||||.||:|||||::.||.|.
Yeast   854 ----DGAT-------------------RKLLSDVFGYVKPGKMTALMGESGAGKTTLLNVLAQRI 895

  Fly   126 PAGTVVQGDILINGRRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLII 190
            ..| |:.||:|:|.:.:....:|..|||.|.|..:..|:|.|.|.|.|.||....|..||:...:
Yeast   896 NMG-VITGDMLVNAKPLPASFNRSCGYVAQADNHMAELSVRESLRFAAELRQQSSVPLEEKYEYV 959

  Fly   191 KELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNP-VILFCDEPTTGLDSYSAQQL 254
            ::::...|:.:.|:..:|.  ..:.|:..:||:|:..|||:..| ::||.||||:||||.||..:
Yeast   960 EKIITLLGMQNYAEALVGK--TGRGLNVEQRKKLSIGVELVAKPSLLLFLDEPTSGLDSQSAWSI 1022

  Fly   255 VATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLL-ADGRVAFTG----SPQHALSFFANH-GYY 313
            |..:..||..|.:|||||||||:.||:.|:.::|| ..|::.:.|    :.:..|.:|... |..
Yeast  1023 VQFMRALADSGQSILCTIHQPSATLFEQFDRLLLLKKGGKMVYFGDIGPNSETLLKYFERQSGMK 1087

  Fly   314 CPEAYNPADFL---IGVLATDPGYEQASQRSAQHLCDQFAVS--SAAKQRDMLVNLEIHMAQSGN 373
            |..:.|||:::   ||..||      ||..|..|  |.:..|  .||.:.::   .|:|....|.
Yeast  1088 CGVSENPAEYILNCIGAGAT------ASVNSDWH--DLWLASPECAAARAEV---EELHRTLPGR 1141

  Fly   374 -FPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQL 437
             ...|.|:.:....::..:...|..|.:|...|.|.....:|.:.:|.|..:|..:.|.......
Yeast  1142 AVNDDPELATRFAASYMTQIKCVLRRTALQFWRSPVYIRAKFFECVACALFVGLSYVGVNHSVGG 1206

  Fly   438 GVQAVQGALFIMI-------------------------SENTYHPMYSVLNLFPQGFPLFMRETR 477
            .::|......:::                         :.||:|  :|||        |......
Yeast  1207 AIEAFSSIFMLLLIALAMINQLHVFAYDSRELYEVREAASNTFH--WSVL--------LLCHAAV 1261

  Fly   478 SGLYSTGQYYAANILALLPG----------------MIIEPLIFVIICYWL----------TGLR 516
            ...:||...:...|....|.                ::|.||.||....|:          :.:.
Yeast  1262 ENFWSTLCQFMCFICYYWPAQFSGRASHAGFFFFFYVLIFPLYFVTYGLWILYMSPDVPSASMIN 1326

  Fly   517 STFYA------------------------------FGVTAMCVVLVMNVATACGCFFSTAFNSVP 551
            |..:|                              :.|.|:...||.|....|.           
Yeast  1327 SNLFAAMLLFCGILQPREKMPAFWRRLMYNVSPFTYVVQALVTPLVHNKKVVCN----------- 1380

  Fly   552 LAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQNITCFQESAD 616
                   |.:|..|          ..|......:|||..:..|...       :.|.|..:....
Yeast  1381 -------PHEYNIM----------DPPSGKTCGEFLSTYMDNNTGY-------LVNPTATENCQY 1421

  Fly   617 LPCFHTGQD-VLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYC 658
            .|  :|.|| |:.||:....:.:||        ||| :..|.|
Yeast  1422 CP--YTVQDQVVAKYNVKWDHRWRN--------FGF-MWAYIC 1453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 85/233 (36%)
3a01204 67..665 CDD:273361 169/687 (25%)
ABC2_membrane 395..600 CDD:279410 44/285 (15%)
PDR12NP_015267.1 3a01205 89..1468 CDD:273362 179/758 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157341552
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm13430
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
TreeFam 00.000 Not matched by this tool.
43.840

Return to query results.
Submit another query.