DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and PEN3

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_176196.1 Gene:PEN3 / 842281 AraportID:AT1G59870 Length:1469 Species:Arabidopsis thaliana


Alignment Length:626 Identity:179/626 - (28%)
Similarity:283/626 - (45%) Gaps:112/626 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 RIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING-RRIGPFMHRISGY 152
            :::...|||.:||.|.||||.||:||||||..||.|:..| .::||:.|:| .::.....|||||
plant   893 QLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDVRISGFPKVQETFARISGY 956

  Fly   153 VYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIG----SGDDK 213
            ..|.|:....:||.|.|.|.|.|||.:.|.|:|:.:.:.:::|...|.|...:.:|    :|   
plant   957 CEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTG--- 1018

  Fly   214 KVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQ 278
              ||..:||||..||||:.||.|:|.||||:|||:.:|..::..:......|.|::|||||||..
plant  1019 --LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSID 1081

  Fly   279 LFDNFNNVMLL-ADGRVAFTG----SPQHALSFFANHG--YYCPEAYNPADFLIGVLATDPGYEQ 336
            :|:.|:.:||: ..|:|.:.|    :....:.:|.:..  ...||.||||.:::          :
plant  1082 IFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWML----------E 1136

  Fly   337 ASQRSAQ-HLCDQFAV---SSAAKQRD--MLVNLEIHMAQSGNFPFDTEVE-----SFRGVAWYK 390
            ||..:|: .|...||.   .||..||:  ::..|.:..|.:.:..|.|:..     .|:...| |
plant  1137 ASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLW-K 1200

  Fly   391 RFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACF--AGTTEPSQLGVQAVQGALF---IMI 450
            ::...|        |.|....:|||..:|.:.:||..|  .|....:...:..|.|||:   |.:
plant  1201 QWWTYW--------RSPDYNLVRFIFTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFV 1257

  Fly   451 SEN---TYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWL 512
            ..|   |..||.:|..      .:|.||..:|:||...|..:.:...||.::|:.:.:.:|.|.:
plant  1258 GINNCSTVQPMVAVER------TVFYRERAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAM 1316

  Fly   513 TG-------------------LRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFNSVPLAMAYLV 558
            .|                   |..|:|..    |.|.|..|...|  ..|::||..         
plant  1317 VGFEWKAEKFFWFVFVSYFSFLYWTYYGM----MTVSLTPNQQVA--SIFASAFYG--------- 1366

  Fly   559 PLDYIFMITSGIFIQVNSLPVAFWWTQF-----LSWMLYANEAMTAAQWSGVQNITCFQESADLP 618
                ||.:.||.||....:|.  ||..:     ::|.:|   .:..:|:..|:  |..|.....|
plant  1367 ----IFNLFSGFFIPRPKIPK--WWIWYYWICPVAWTVY---GLIVSQYGDVE--TRIQVLGGAP 1420

  Fly   619 CFHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCL 659
            .....|.:.|.|.|....:......::.....|..:..:|:
plant  1421 DLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCI 1461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 87/214 (41%)
3a01204 67..665 CDD:273361 179/626 (29%)
ABC2_membrane 395..600 CDD:279410 56/236 (24%)
PEN3NP_176196.1 PLN03140 31..1469 CDD:215599 179/626 (29%)
ABC_trans_N 89..165 CDD:291196
ABCG_PDR_domain1 154..426 CDD:213200
ABC2_membrane 527..733 CDD:279410
PDR_assoc 740..800 CDD:285559
ABCG_PDR_domain2 864..1102 CDD:213199 87/214 (41%)
ABC2_membrane 1197..1404 CDD:279410 58/245 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X52
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
32.870

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