DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and PEN3

DIOPT Version :10

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_176196.1 Gene:PEN3 / 842281 AraportID:AT1G59870 Length:1469 Species:Arabidopsis thaliana


Alignment Length:626 Identity:179/626 - (28%)
Similarity:283/626 - (45%) Gaps:112/626 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 RIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING-RRIGPFMHRISGY 152
            :::...|||.:||.|.||||.||:||||||..||.|:..| .::||:.|:| .::.....|||||
plant   893 QLLKGVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDVRISGFPKVQETFARISGY 956

  Fly   153 VYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIG----SGDDK 213
            ..|.|:....:||.|.|.|.|.|||.:.|.|:|:.:.:.:::|...|.|...:.:|    :|   
plant   957 CEQTDIHSPQVTVRESLIFSAFLRLPKEVGKDEKMMFVDQVMELVELDSLRDSIVGLPGVTG--- 1018

  Fly   214 KVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQ 278
              ||..:||||..||||:.||.|:|.||||:|||:.:|..::..:......|.|::|||||||..
plant  1019 --LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSID 1081

  Fly   279 LFDNFNNVMLL-ADGRVAFTG----SPQHALSFFANHG--YYCPEAYNPADFLIGVLATDPGYEQ 336
            :|:.|:.:||: ..|:|.:.|    :....:.:|.:..  ...||.||||.:::          :
plant  1082 IFEAFDELMLMKRGGQVIYAGPLGQNSHKVVEYFESFPGVSKIPEKYNPATWML----------E 1136

  Fly   337 ASQRSAQ-HLCDQFAV---SSAAKQRD--MLVNLEIHMAQSGNFPFDTEVE-----SFRGVAWYK 390
            ||..:|: .|...||.   .||..||:  ::..|.:..|.:.:..|.|:..     .|:...| |
plant  1137 ASSLAAELKLSVDFAELYNQSALHQRNKALVKELSVPPAGASDLYFATQFSQNTWGQFKSCLW-K 1200

  Fly   391 RFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACF--AGTTEPSQLGVQAVQGALF---IMI 450
            ::...|        |.|....:|||..:|.:.:||..|  .|....:...:..|.|||:   |.:
plant  1201 QWWTYW--------RSPDYNLVRFIFTLATSLLIGTVFWQIGGNRSNAGDLTMVIGALYAAIIFV 1257

  Fly   451 SEN---TYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWL 512
            ..|   |..||.:|..      .:|.||..:|:||...|..:.:...||.::|:.:.:.:|.|.:
plant  1258 GINNCSTVQPMVAVER------TVFYRERAAGMYSAMPYAISQVTCELPYVLIQTVYYSLIVYAM 1316

  Fly   513 TG-------------------LRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFNSVPLAMAYLV 558
            .|                   |..|:|..    |.|.|..|...|  ..|::||..         
plant  1317 VGFEWKAEKFFWFVFVSYFSFLYWTYYGM----MTVSLTPNQQVA--SIFASAFYG--------- 1366

  Fly   559 PLDYIFMITSGIFIQVNSLPVAFWWTQF-----LSWMLYANEAMTAAQWSGVQNITCFQESADLP 618
                ||.:.||.||....:|.  ||..:     ::|.:|   .:..:|:..|:  |..|.....|
plant  1367 ----IFNLFSGFFIPRPKIPK--WWIWYYWICPVAWTVY---GLIVSQYGDVE--TRIQVLGGAP 1420

  Fly   619 CFHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCL 659
            .....|.:.|.|.|....:......::.....|..:..:|:
plant  1421 DLTVKQYIEDHYGFQSDFMGPVAAVLIAFTVFFAFIFAFCI 1461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 3a01204 67..665 CDD:273361 179/626 (29%)
PEN3NP_176196.1 PLN03140 31..1469 CDD:215599 179/626 (29%)

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