DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and ABCG24

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_175745.4 Gene:ABCG24 / 841775 AraportID:AT1G53390 Length:1109 Species:Arabidopsis thaliana


Alignment Length:703 Identity:182/703 - (25%)
Similarity:321/703 - (45%) Gaps:114/703 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DSKRIDVEAPERVEQHELQVMPVGSTIEVPSLDSTPKLSKRNSSERSLPLRSYSKWSPTEQG--- 66
            :.||:..:...::::.:.|:...       :.|...|........::|......|.:...:.   
plant   445 EGKRVKGQTLAKIKKTQSQIFKY-------AYDRIEKEKAMEQENKNLTFSGIVKMATNSETRKR 502

  Fly    67 --ATLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGT 129
              ..|.::||.:.....|     |:::...||:::||.:.|:||.||:|||:|:|.|| .:..|.
plant   503 HLMELSFKDLTLTLKSNG-----KQVLRCVTGSMKPGRITAVMGPSGAGKTSLLSALA-GKAVGC 561

  Fly   130 VVQGDILINGRRIGPFMH---RISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIK 191
            .:.|.|||||::  ..:|   :|.|:|.|||:..|:|||.|:|.|.|..||...:||.::.|:::
plant   562 KLSGLILINGKQ--ESIHSYKKIIGFVPQDDVVHGNLTVEENLWFHAKCRLPADLSKADKVLVVE 624

  Fly   192 ELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVA 256
            .:::..||.:...:.:|: .:|:.:|||:|||:...:|::..|.:||.||||:||||.|:|.|:.
plant   625 RIIDSLGLQAVRSSLVGT-VEKRGISGGQRKRVNVGLEMVMEPSVLFLDEPTSGLDSASSQLLLR 688

  Fly   257 TLYELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRV-AFTGSPQHALSFFANHGYYCPEAYNP 320
            .|...|.:|..|...:||||..||..||:::|||.|.: .:.||......:|:..|.:.|:..||
plant   689 ALRHEALEGVNICMVVHQPSYTLFKTFNDLVLLAKGGLTVYHGSVNKVEEYFSGLGIHVPDRINP 753

  Fly   321 ADFLIGVLA--------TDPGYEQASQRSAQHLCDQFAV------SSAAKQRDMLVNLEIHMAQS 371
            .|:.|.||.        :..||::..||...|  ..::|      :|||       .||.:....
plant   754 PDYYIDVLEGVVISMGNSGIGYKELPQRWMLH--KGYSVPLDMRNNSAA-------GLETNPDLG 809

  Fly   372 GNFPFDTEVESFRGVAWY-----------KRFHVVWLRASLTLLRDPT--IQWLRFIQKIA---- 419
            .|.| |...::|....|.           |..|.......|:..|.|:  :|:..|:.:||    
plant   810 TNSP-DNAEQTFARELWRDVKSNFRLRRDKIRHNFLKSRDLSHRRTPSTWLQYKYFLGRIAKQRM 873

  Fly   420 -----------MAFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPL-- 471
                       :..:.|||.....:.|.....| .|.::.:|:.:....:.::     :.|.|  
plant   874 REAQLQATDYLILLLAGACLGSLIKASDESFGA-PGYIYTIIAVSLLCKIAAL-----RSFSLDK 932

  Fly   472 --FMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVV-LVM 533
              :.||:.||:.|:..:.|.:.:.:. .::::||:::.:.|:.|..||||:...:..:|:| .|.
plant   933 LHYWRESASGMSSSACFLAKDTIDIF-NILVKPLVYLSMFYFFTNPRSTFFDNYIVLVCLVYCVT 996

  Fly   534 NVATACGCFFSTAFNSVPLAMAYLVPLDYIFMIT----SGIFIQVNSLPVAFWWTQFLSWMLYAN 594
            .:|.|...|...   |.....:.|:|:....:.|    |.:...:..|       .:..|.|.|.
plant   997 GIAYALAIFLQP---STAQLFSVLLPVVLTLVATQPKNSELIRIIADL-------SYPKWALEAF 1051

  Fly   595 EAMTAAQWSGVQNITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAMVGL 647
            ....|.::.||..||           ..|..:...|..|:.::...:|.:|||
plant  1052 VIGNAQKYYGVWMIT-----------RCGSLMKSGYDINKWSLCIMILLLVGL 1093

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 89/240 (37%)
3a01204 67..665 CDD:273361 175/636 (28%)
ABC2_membrane 395..600 CDD:279410 45/230 (20%)
ABCG24NP_175745.4 EcfA2 504..736 CDD:224047 91/240 (38%)
ABCG_EPDR 505..731 CDD:213180 89/234 (38%)
ABC2_membrane 867..>1006 CDD:304374 30/145 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.780

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