DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and ABCG35

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_172973.1 Gene:ABCG35 / 838087 AraportID:AT1G15210 Length:1442 Species:Arabidopsis thaliana


Alignment Length:629 Identity:181/629 - (28%)
Similarity:290/629 - (46%) Gaps:118/629 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 RIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING--RRIGPFMHRISG 151
            :::...|.|.:||.|.||||.||:||||||..||.|:..| .::||:.::|  ::...|. ||||
plant   866 QLLKGVTSAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDVRVSGFPKKQETFA-RISG 928

  Fly   152 YVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIG----SGDD 212
            |..|.|:....:||.|.|.|.|.|||.:.||||::.:.:.:::|...|:......:|    :|  
plant   929 YCEQTDIHSPQVTVRESLIFSAFLRLAKEVSKEDKLMFVDQVMELVELVDLRDAIVGLPGVTG-- 991

  Fly   213 KKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSS 277
               ||..:||||..||||:.||.|:|.||||:|||:.:|..::..:......|.|::|||||||.
plant   992 ---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRAVRNTVDTGRTVVCTIHQPSI 1053

  Fly   278 QLFDNFNNVMLL-ADGRVAFTG----SPQHALSFFANHGYY--CPEAYNPADFLIGVLATDPGYE 335
            .:|:.|:.::|: ..|.|.::|    :....:.:|.:....  .||.||||.:::          
plant  1054 DIFEAFDELLLMKRGGHVIYSGPLGRNSHKVVEYFESFPGVPKIPEKYNPATWML---------- 1108

  Fly   336 QASQRSAQ-HLCDQFA---VSSAAKQRDMLVNLEIHMAQSG--NFPFDTEVE-----SFRGVAWY 389
            :||..:|: .|...||   .:||..||:..:..|:.:...|  :..|.|:..     .|:...| 
plant  1109 EASSLAAELKLGVDFAELYKASALCQRNKALVQELSVPPQGATDLYFATQFSQNTWGQFKSCLW- 1172

  Fly   390 KRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACF--AGTTEPSQLGVQAVQGAL-----F 447
            |::...|        |.|....:|||..:|.:.:||:.|  .|....:...:..|.||:     |
plant  1173 KQWWTYW--------RSPDYNLVRFIFTLATSLMIGSVFWQIGGKRSNVQDLTMVIGAIYAAVVF 1229

  Fly   448 IMISE-NTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYW 511
            :.|:. :|..||.:|..      .:|.||..:|:||...|..:.:...||.::|:...:.:|.|.
plant  1230 VGINNCSTVQPMVAVER------TVFYREKAAGMYSAIPYAISQVTCELPYVLIQTTYYSLIIYS 1288

  Fly   512 LTG-------------------LRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFNSVPLAMAYL 557
            :.|                   |..|:|..    |.|.|..|...|  ..|::||..        
plant  1289 MVGFEWKASKFLWFIFINYFSFLYWTYYGM----MTVSLTPNQQVA--SIFASAFYG-------- 1339

  Fly   558 VPLDYIFMITSGIFIQVNSLPVAFWWTQF-----LSWMLYANEAMTAAQWSGVQNITCFQESADL 617
                 ||.:.||.||....:|.  ||..:     ::|.:|   .:..:|:..|:........|  
plant  1340 -----IFNLFSGFFIPRPKIPK--WWVWYYWICPVAWTIY---GLITSQYGDVETPIALLGGA-- 1392

  Fly   618 PCFHTGQDVLDKYSFNESNVYRNLLA--MVGLYFGFHLLGYYCL 659
            |.....|.:.|:|.| ||: |...:|  :||....|..:..:|:
plant  1393 PGLTVKQYIKDQYGF-ESD-YMGPVAGVLVGFTVFFAFIFAFCI 1434

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 85/215 (40%)
3a01204 67..665 CDD:273361 181/629 (29%)
ABC2_membrane 395..600 CDD:279410 55/236 (23%)
ABCG35NP_172973.1 PLN03140 8..1442 CDD:215599 181/629 (29%)
ABC_trans_N 88..163 CDD:291196
ABCG_PDR_domain1 182..424 CDD:213200
ABC2_membrane 525..731 CDD:279410
PDR_assoc 738..802 CDD:285559
ABCG_PDR_domain2 837..1075 CDD:213199 85/215 (40%)
ABC2_membrane 1170..1375 CDD:279410 57/243 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
43.870

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