DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and ABCA12

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_001318859.1 Gene:ABCA12 / 836292 AraportID:AT5G61700 Length:917 Species:Arabidopsis thaliana


Alignment Length:433 Identity:101/433 - (23%)
Similarity:173/433 - (39%) Gaps:94/433 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 DSKRIDVEAPERVEQHELQVMPVGSTIEVPSLDSTPKLSKRNSSERSLPLRSYSKWSPTEQGATL 69
            ||||:.::    :::|::          ....:|..||....|:..::...:..|..|       
plant   562 DSKRVFID----MDKHDV----------TQERESVQKLRNEGSTGHAILCDNLKKVYP------- 605

  Fly    70 VWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTL-AFRQPAGTVVQG 133
                       |..|...|..:.....::..|....::|.:|:|||:.:|.: ...:|:    .|
plant   606 -----------GRDGNPPKMAVRGLYLSVSSGECFGMLGPNGAGKTSFISMMTGLLKPS----SG 655

  Fly   134 DILINGRRIGPFMHRI---SGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLE 195
            ..|:.|..|...|:::   .|...|.||...:||..|||.|...|   :.:...:....::|.|:
plant   656 TALVQGLDICKDMNKVYTSMGVCPQHDLLWETLTGREHLLFYGRL---KNIKGSDLTQAVEESLK 717

  Fly   196 RTGLLSAAQTRIGSGDDKKV--LSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATL 258
            ...|..      |...||..  .|||.::||:.|:.|:.||.:::.|||:||||..|.:.| ..:
plant   718 SVSLYD------GGVGDKPAGNYSGGMKRRLSVAISLIGNPKVVYLDEPSTGLDPASRKNL-WNV 775

  Fly   259 YELAQKGTTILCTIH--QPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPA 321
            .:.|::.|.|:.|.|  :.:..|.|...   :..||.:...|:.:...|.:.  |.|        
plant   776 IKRAKQNTAIILTTHSMEEAEFLCDRLG---IFVDGGLQCIGNSKELKSRYG--GSY-------- 827

  Fly   322 DFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMAQSGNFPFDTE----VES 382
               :..:.|...:|:..:|..:      :||..||:       ..|:|.:..|....:    .|.
plant   828 ---VFTMTTSSKHEEEVERLVE------SVSPNAKK-------IYHLAGTQKFELPKQEVRIAEV 876

  Fly   383 FRGVAWYKRFHVV--WLRASLTLLRDPTIQWLRFIQKIAMAFI 423
            ||.|...|....|  |..|. |.|.|..|:    :.:.|.|||
plant   877 FRAVEKAKANFTVFAWGLAD-TTLEDVFIK----VARTAQAFI 914

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 60/239 (25%)
3a01204 67..665 CDD:273361 90/371 (24%)
ABC2_membrane 395..600 CDD:279410 11/31 (35%)
ABCA12NP_001318859.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

Return to query results.
Submit another query.