DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and ABCG4

DIOPT Version :10

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_194305.1 Gene:ABCG4 / 828680 AraportID:AT4G25750 Length:577 Species:Arabidopsis thaliana


Alignment Length:603 Identity:172/603 - (28%)
Similarity:280/603 - (46%) Gaps:91/603 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 IINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHR-ISGYV 153
            |:.|.|....|..::|::|.||:||:||:..||.|.   :...|.||:|...|.|..:| ||.||
plant    30 ILRNITLTSHPSQILAIIGPSGAGKSTLLDILAART---SPTSGSILLNSVLINPSSYRKISSYV 91

  Fly   154 YQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSG 218
            .|.|.|...|||.|...|.|.|.|.:.:||...  ::..||:...|...|.||:|.|     |||
plant    92 PQHDTFFPLLTVSETFTFSASLLLPKNLSKVSS--VVASLLKELNLTHLAHTRLGQG-----LSG 149

  Fly   219 GERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELA-QKGTTILCTIHQPSSQLFDN 282
            |||:|::..:.||::|.:|..||||:||||.||..:|..|..:| .:...::.:|||||.::...
plant   150 GERRRVSIGLSLLHDPEVLLLDEPTSGLDSKSAFDVVQILKSIATSRERIVILSIHQPSFKILSL 214

  Fly   283 FNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLAT--DPGYEQASQRSAQHL 345
            .:.|:||:.|.:.:.|......:|..:.|:..|...|..::.:.:|..  || ||.|:.....| 
plant   215 IDRVLLLSKGTIVYHGRLDLLEAFLLSKGFTVPSQLNSLEYAMEILQNIRDP-YENANIALPDH- 277

  Fly   346 CDQFAVSSAAKQRDMLVN------LEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLL 404
            |.:   |....|:..:|.      .||.:..|                   ||..:..|....||
plant   278 CPE---SKKQNQKQSIVRYKSSRITEISLLSS-------------------RFWKIIYRTRQLLL 320

  Fly   405 RDPTIQWLRFIQKIAMAFIIGACF--AGTTEPSQLGVQAVQG----ALFIMISENTYHPMYSVLN 463
            .:       .::.:.:..::|..:  .||   .:.|::...|    .|..::|..|     ..|.
plant   321 TN-------ILESLVVGLVLGTIYLNIGT---GKEGIRKRFGLFAFTLTFLLSSTT-----QTLP 370

  Fly   464 LFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMC 528
            :|....|:.:|||.||||....:..||.|..||.:::..:|:.:..|:|.||..::.|.....:.
plant   371 IFIDERPILLRETSSGLYRLSSHILANTLVFLPYLLLIAIIYSVSLYFLVGLCFSWQALAYFVLV 435

  Fly   529 VVLVMNVATACGCFFSTAFNSVPLAMAYLVPLDYI------------FMITSGIFIQVNSLPVAF 581
            :.:::.:|           ||..|.::.|.| :||            |.:.||.||...|||..:
plant   436 IWIIVLMA-----------NSFVLFLSSLAP-NYIAGTSSVTILLAAFFLFSGYFISKESLPKYW 488

  Fly   582 WWTQFLSWMLYANEAMTAAQWSGVQN--ITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAM 644
            .:..|.|...||.:|:...::|.:.|  :..|:|::...|..||.|||||...:|...:.|:..:
plant   489 LFMYFFSMYKYALDALLINEYSCLHNKCLVWFEEASVNSCLVTGGDVLDKNGLHERQRWFNVYML 553

  Fly   645 VGLYFGFHLLGYYCLWRR 662
            :|.:..:.:|.:..|.:|
plant   554 LGFFVLYRVLCFLVLLKR 571

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 3a01204 67..665 CDD:273361 172/603 (29%)
ABCG4NP_194305.1 3a01204 30..572 CDD:273361 172/603 (29%)

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