DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and ABCG18

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_191071.1 Gene:ABCG18 / 824677 AraportID:AT3G55110 Length:708 Species:Arabidopsis thaliana


Alignment Length:735 Identity:191/735 - (25%)
Similarity:319/735 - (43%) Gaps:142/735 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SDSDSKRIDVE-APERVEQHELQVMPVGSTIEVPSLDSTPKLSKRNSSERSLPLRSYSKWSPTEQ 65
            :||..|:...| ||   .||.|.:.|...|..||.|.|...||      .::.||....:|..:.
plant    30 NDSGRKKYPGENAP---TQHILDLAPAAETRSVPFLLSFNNLS------YNVVLRRRFDFSRRKT 85

  Fly    66 GATLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTV 130
            .:                   :|.::::.||..:.|.::|::|.||:||:||:..||.| .|...
plant    86 AS-------------------VKTLLDDITGEARDGEILAVLGGSGAGKSTLIDALAGR-VAEDS 130

  Fly   131 VQGDILINGRRI--GPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKEL 193
            ::|.:.:||.::  ...:..||.||.||||....|||.|.|.|.:..||.|.:.|.::...::.|
plant   131 LKGTVTLNGEKVLQSRLLKVISAYVMQDDLLFPMLTVKETLMFASEFRLPRSLPKSKKMERVETL 195

  Fly   194 LERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATL 258
            :::.||.:||.|.||. :..:.:|||||:|::..::::::|::||.||||:||||.:|..:|..|
plant   196 IDQLGLRNAADTVIGD-EGHRGVSGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTNAFMVVQVL 259

  Fly   259 YELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADF 323
            ..:||.|:.::.:|||||:::....:.:::|:.|:..|.|||....|||::.|...||..|..:|
plant   260 KRIAQSGSVVIMSIHQPSARIIGLLDRLIILSHGKSVFNGSPVSLPSFFSSFGRPIPEKENITEF 324

  Fly   324 LIGVLATDPG-----------YEQASQRSAQHLCDQFAVS-----SAAKQRDMLVNLEIHMAQSG 372
            .:.|:....|           .|:..|........|..||     :|:..|..||:     ..||
plant   325 ALDVIRELEGSSEGTRDLVEFNEKWQQNQTARATTQSRVSLKEAIAASVSRGKLVS-----GSSG 384

  Fly   373 NFPFDTE-VESFRG------VAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAG 430
            ..|...| |.|:..      ....||:...|:|.       |.:..:|    |....:.|...|.
plant   385 ANPISMETVSSYANPPLAETFILAKRYIKNWIRT-------PELIGMR----IGTVMVTGLLLAT 438

  Fly   431 T---TEPSQLGVQAVQG-------ALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQ 485
            .   .:.:..|.|...|       .:|...::|        :.:|.|...:|:|||....|.|..
plant   439 VYWRLDNTPRGAQERMGFFAFGMSTMFYCCADN--------IPVFIQERYIFLRETTHNAYRTSS 495

  Fly   486 YYAANILALLPGMIIEPLIFVIICYWLT----GLRSTFYAFGVTAMCVVLVMNVATACGCFFSTA 546
            |..::.|..||.::...:.|....:|..    ||.|.||      .|  |::..|...|....|.
plant   496 YVISHALVSLPQLLALSIAFAATTFWTVGLSGGLESFFY------YC--LIIYAAFWSGSSIVTF 552

  Fly   547 FNS-VP-LAMAYLVPLDYI--FMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQW----- 602
            .:. :| :.|:|:|.:.|:  .::..|.:|..:.:|:.:.|..::|.:.|..||:...::     
plant   553 ISGLIPNVMMSYMVTIAYLSYCLLLGGFYINRDRIPLYWIWFHYISLLKYPYEAVLINEFDDPSR 617

  Fly   603 ---SGVQNI-------------------------TCFQESADLPCFHTGQDVLDKYSFNESNVYR 639
               .|||..                         |...||.   |..||.|:|.:....:.:.:.
plant   618 CFVKGVQVFDGTLLAEVSHVMKVKLLDTLSGSLGTKITEST---CLRTGPDLLMQQGITQLSKWD 679

  Fly   640 NLLAMVGLYFGFHLLGYYCL 659
            .|...:.....|.:|.|..|
plant   680 CLWITLAWGLFFRILFYLSL 699

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 76/233 (33%)
3a01204 67..665 CDD:273361 171/669 (26%)
ABC2_membrane 395..600 CDD:279410 49/222 (22%)
ABCG18NP_191071.1 3a01204 57..707 CDD:273361 180/705 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.880

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