DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and ABCG20

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_190919.1 Gene:ABCG20 / 824519 AraportID:AT3G53510 Length:739 Species:Arabidopsis thaliana


Alignment Length:679 Identity:188/679 - (27%)
Similarity:303/679 - (44%) Gaps:99/679 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 WS-------PTEQGATLVWRDL---------------CVYTNVGGSGQRM--KRIINNSTGAIQP 100
            ||       |:.....|.::||               |..:...|:...|  |.::|..:|..:.
plant    72 WSSVPSSRVPSSSPFVLSFKDLTYSVKIKKKFKPFPCCGNSPFDGNDMEMNTKVLLNGISGEARE 136

  Fly   101 GTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHR-ISGYVYQDDLFLGSLT 164
            |.:||::|:|||||:||:..||.|....: ::|||.:||..:...:|: ||.||.||||....||
plant   137 GEMMAVLGASGSGKSTLIDALANRISKES-LRGDITLNGEVLESSLHKVISAYVMQDDLLFPMLT 200

  Fly   165 VLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVE 229
            |.|.|.|.|..||...:||::::..::.|:::.||.:||:|.||. :..:.:|||||:|::...:
plant   201 VEETLMFSAEFRLPSSLSKKKKKARVQALIDQLGLRNAAKTVIGD-EGHRGVSGGERRRVSIGTD 264

  Fly   230 LLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRV 294
            ::::|:|||.||||:||||.||..:|..|..:||.|:.::.:|||||.::....:.::.|:.|..
plant   265 IIHDPIILFLDEPTSGLDSTSAYMVVKVLQRIAQSGSIVIMSIHQPSYRILGLLDKLIFLSRGNT 329

  Fly   295 AFTGSPQHALSFFANHGYYCPEAYNPADF---LIGVLATDP-GYE---------QASQRSAQ--- 343
            .::|||.|...||:..|:..||..|..:|   ||..|...| |.:         :|.|.|:|   
plant   330 VYSGSPTHLPQFFSEFGHPIPENENKPEFALDLIRELEDSPEGTKSLVEFHKQWRAKQTSSQSRR 394

  Fly   344 ----HLCDQFAVSSAAKQRDMLVNLEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLL 404
                .|.|..   ||:..|..||        ||.....:..::|....|.:.. |:..|:.|...
plant   395 NTNVSLKDAI---SASISRGKLV--------SGATNLRSSFQTFANPFWTEML-VIGKRSILNSR 447

  Fly   405 RDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGF 469
            |.|.:..:|....:....|:...| ...:.|..|:|...| .|......|::.....:.:|.|..
plant   448 RQPELFGIRLGAVLVTGMILATIF-WKLDNSPRGIQERLG-FFAFAMSTTFYTCAEAIPVFLQER 510

  Fly   470 PLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVVLVMN 534
            .:|||||....|....|..|:.:..:|.:||....|....:...||......|......::....
plant   511 YIFMRETAYNAYRRSSYVLAHTIISIPALIILSAAFAASTFSAVGLAGGSEGFLFFFFTILTAFW 575

  Fly   535 VATACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAM-- 597
            ..::...|.|...:.|.:....:|.:...|::.||.||..:.:|:.:.|..:||.:.|..|.:  
plant   576 AGSSFVTFLSGVVSHVMIGFTVVVAILAYFLLFSGFFISRDRIPLYWIWFHYLSLVKYPYEGVLQ 640

  Fly   598 --------------------------TAAQ------WSGVQNITCFQESADLPCFHTGQDVLDKY 630
                                      ||.:      .|||..|....|:    |..||.|:|.:.
plant   641 NEFEDPTKCFVRGIQMFDNSPLGQVPTAVKISLLKSMSGVLGINVTAET----CVTTGIDILKQQ 701

  Fly   631 SFNESNVYRNLLAMVGLYFGFHLLGYYCL 659
            ...|.:.:..|...|...|.|.:|.|:.|
plant   702 GITEISKWNCLWITVAWGFFFRVLFYFTL 730

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 88/249 (35%)
3a01204 67..665 CDD:273361 185/665 (28%)
ABC2_membrane 395..600 CDD:279410 46/232 (20%)
ABCG20NP_190919.1 P-loop_NTPase 119..333 CDD:304359 83/215 (39%)
3a01204 120..738 CDD:273361 180/631 (29%)
ABC2_membrane 438..641 CDD:279410 45/204 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
65.880

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