DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and ABCG27

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_001319729.1 Gene:ABCG27 / 824396 AraportID:AT3G52310 Length:743 Species:Arabidopsis thaliana


Alignment Length:625 Identity:173/625 - (27%)
Similarity:296/625 - (47%) Gaps:86/625 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    78 TNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLA--FRQPAGTVVQGDILINGR 140
            |..|.:....|.|:|..:|:..||.|:||||.||||||||::.|.  |.|..   :.|.:..|.:
plant   157 TTKGMTSSSEKSILNGISGSAYPGELLALMGPSGSGKTTLLNALGGRFNQQN---IGGSVSYNDK 218

  Fly   141 RIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQT 205
            .....:....|:|.|||:....|||.|.|.:.|.|||.:.::::|:......:::..||.....|
plant   219 PYSKHLKTRIGFVTQDDVLFPHLTVKETLTYTALLRLPKTLTEQEKEQRAASVIQELGLERCQDT 283

  Fly   206 RIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILC 270
            .|| |...:.:|||||||:....|::.||.:|..||||:.|||.:|.::|..|:.:|:.|.||:.
plant   284 MIG-GSFVRGVSGGERKRVCIGNEIMTNPSLLLLDEPTSSLDSTTALKIVQMLHCIAKAGKTIVT 347

  Fly   271 TIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATDPGYE 335
            |||||||:||..|:.:::|:.|.:.:.|....|:|:|::.|.....|.|||:||:.::..:    
plant   348 TIHQPSSRLFHRFDKLVVLSRGSLLYFGKASEAMSYFSSIGCSPLLAMNPAEFLLDLVNGN---- 408

  Fly   336 QASQRSAQHLCDQFAVSSAAKQRDMLVN--LEI--------------------------HMAQSG 372
                      .:..:|.||.|::..:.|  .||                          .|....
plant   409 ----------MNDISVPSALKEKMKMXNSCSEIGSSKPAPTVVYEYLEEAYKTQIAVMEKMKLMA 463

  Fly   373 NFPFDTEVESF-------RGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAG 430
            ..|.|.||:..       .|::|::::.::.|| .:...|.....|||..|.::.|.|:|..:..
plant   464 PVPLDEEVKLMITCPKREWGLSWWEQYCLLSLR-GIKERRHDYFSWLRVTQVLSTAIILGLLWWQ 527

  Fly   431 TTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALL 495
            :...|..|:|...|.||.:.....:.|:::.:..|||...:..:|..|.:|....|:.|...:.|
plant   528 SDITSXKGLQDQVGLLFFIAVFWGFFPVFTAIFTFPQERAMLSKERESNMYRLSAYFVARTTSDL 592

  Fly   496 PGMIIEPLIFVIICYWLTGLR----STFYAFGVTAMCVVLVMNVATACGCFFSTAFNSVPLAMAY 556
            |..:|.|::|:::.|::.|||    |.|.:.....:|:|....:..|.|........:..||...
plant   593 PLDLILPVLFLVVVYFMAGLRLRAESFFLSVLTVFLCIVAAQGLGLAIGASLMDLKKATTLASVT 657

  Fly   557 LVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQNITCFQESADLPCFH 621
            ::    .||:..|.|  |..:|....|.:|:|:..:..:.:...|:..:      .||.:     
plant   658 VM----TFMLAGGYF--VKKVPFFIAWIRFMSFNYHTYKLLVKVQYEEI------MESVN----- 705

  Fly   622 TGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCLWR 661
             |:::       ||.: :.:.|:|.:..|:.|:.|:.|.|
plant   706 -GEEI-------ESGL-KEVSALVAMIIGYRLVAYFSLRR 736

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 84/221 (38%)
3a01204 67..665 CDD:273361 173/625 (28%)
ABC2_membrane 395..600 CDD:279410 51/208 (25%)
ABCG27NP_001319729.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 1 1.000 - - otm2959
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.820

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