DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and ABCG3

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_001318302.1 Gene:ABCG3 / 817351 AraportID:AT2G28070 Length:730 Species:Arabidopsis thaliana


Alignment Length:681 Identity:171/681 - (25%)
Similarity:304/681 - (44%) Gaps:113/681 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 TPKLSKRNSSERSLPLRSYSKWSPTEQ------------GATLVWRDLCVYTNVGGSGQRMKRII 91
            :|.|||.||...:.|        |..:            ||::.|:||.|  .:.|..:...:::
plant    80 SPSLSKMNSGSMASP--------PVPEGGAGTGVVRKIAGASIAWKDLTV--TMKGKRKYSDKVV 134

  Fly    92 NNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRR----IGPFMHRISGY 152
            .:|.|...|||:..:||.:.|||:||:..||.|.|....:.|::.:||.:    .|.:     |:
plant   135 KSSNGYAFPGTMTVIMGPAKSGKSTLLRALAGRLPPSAKMYGEVFVNGSKSHMPYGSY-----GF 194

  Fly   153 VYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLS 217
            |.::...:|||||.|.|.:.|.|:|...:.  ::|.::::.::...|...|...||.....|.|.
plant   195 VERETQLIGSLTVREFLYYSALLQLPGFLF--QKRSVVEDAIQAMSLSDYANKLIGGHCYMKGLR 257

  Fly   218 GGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDN 282
            .|||:|::.|.||:..|.|||.|||...|||.||..::.||.:||..|.|::.||:|.|:::|..
plant   258 SGERRRVSIARELVMRPHILFIDEPLYHLDSVSALLMMVTLKKLASMGCTLVFTIYQSSTEVFGL 322

  Fly   283 FNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATD---------------P 332
            |:.:.||::|...|.|.....|..|:|.|:.||...:|:|..:..:.||               .
plant   323 FDRICLLSNGNTLFFGETLACLQHFSNAGFPCPIMQSPSDHFLRAINTDFDRIIAMCKNWQDDNG 387

  Fly   333 GYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWL 397
            .:...:..:|..:....|...::...|.:..:.|.:.:...    |:::|........|..|:..
plant   388 DFSAVNMDTAVAIRTLEATYKSSADADSVEAMIIKLTEREG----TQLKSKGKAGAATRVAVLTW 448

  Fly   398 RASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVL 462
            |:.|.:.|:....|||.|..:.:...||..::|... |...|.....|:|:.:|      ..|:|
plant   449 RSLLVMSREWKYYWLRLILYMILTLSIGTLYSGLGH-SLSSVATRVAAVFVFVS------FASLL 506

  Fly   463 NLFPQGFPLFMRETR----------SG--LYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGL 515
            .:  .|.|..::|.:          ||  ::..||:     |..:|.:.:..:...::.|::.||
plant   507 GI--AGIPSLLKEIKIYRSEASNQHSGAFVFLLGQF-----LGSIPFLFLMSISSSLVFYFMVGL 564

  Fly   516 RSTFYAFGVTAMCVVLVMN------VATACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQV 574
            |..|      ::.:..|:|      |......|.:..:..|..:...|:.:..|.|:.:|.|...
plant   565 RDDF------SLLMYFVLNFFMCLLVNEGLMLFIACIWRDVYWSTLTLISVHVIMMLAAGHFRIR 623

  Fly   575 NSLPVAFWWTQF--LSWMLYANEAMTAAQWSG-------VQNITCFQESADLPCFHTGQDVLDKY 630
            .:||...|...|  :|:..|:.|.:...::.|       |::|:.:|.            :...|
plant   624 TALPKPVWTYPFAYISFHTYSIEGLLENEYLGEVFAVGEVRSISGYQA------------IQGNY 676

  Fly   631 SFN-ESNV-YRNLLAMVGLYFGFHLLGYYCL 659
            ..: ::|. :||:|.::.:.||:.||.|..|
plant   677 QISPDTNAKWRNMLVLLAMAFGYRLLVYVLL 707

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 81/235 (34%)
3a01204 67..665 CDD:273361 162/641 (25%)
ABC2_membrane 395..600 CDD:279410 48/224 (21%)
ABCG3NP_001318302.1 3a01204 110..713 CDD:273361 163/643 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.810

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