DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and abcg2

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:XP_012819987.2 Gene:abcg2 / 734088 XenbaseID:XB-GENE-991895 Length:682 Species:Xenopus tropicalis


Alignment Length:622 Identity:184/622 - (29%)
Similarity:303/622 - (48%) Gaps:78/622 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    90 IINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQ-PAGTVVQGDILINGRRIGPFMHRISGYV 153
            |:|:..|.::|| |.|::|.:||||::|:..||.|: |.|  :.|.:|::|.........:||||
 Frog    82 ILNDVNGIMRPG-LNAILGPTGSGKSSLLDVLAARKDPNG--LSGQVLVDGEPQPSNFKCLSGYV 143

  Fly   154 YQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSG 218
            .|||:.:|:|::.|:|.|.|.|||.|.|.::|:...|.::::..||...|.:::|:...:.| ||
 Frog   144 VQDDVVMGTLSIRENLQFSAALRLPRSVKQKEKDERINQVIKELGLTKVADSKVGTQFIRGV-SG 207

  Fly   219 GERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNF 283
            |||||....:||:.:|.|||.||||||||:.:|..::..|..::::|.||:.:||||...:|..|
 Frog   208 GERKRTNIGMELITDPGILFLDEPTTGLDASTANAVLLLLKRMSRQGKTIIFSIHQPRYSIFRLF 272

  Fly   284 NNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATDPG--------------- 333
            :::.|||.||:.|.|..:.||.:|...||.|....|||||.:.::..|..               
 Frog   273 DSLTLLAGGRLLFHGPSRDALDYFTGLGYECESHNNPADFFLDIINGDSTAVALNKLEDVELENE 337

  Fly   334 ----YEQASQRSAQHLCDQFAVSS-----AAKQRDMLVNLEIHMAQSGNFPFDTEVESFRGVAWY 389
                .:..|:...::|.:||..:|     .|:...|.:..:|    ..||       ..|.:.:.
 Frog   338 QKEVNDNGSKTVVENLSEQFCTTSYYLETKAELEKMSLGKKI----KSNF-------FARQITYN 391

  Fly   390 KRF--HVVWL--RASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALFIMI 450
            ..|  .:.|:  |:...|.|:|.....:.:..:.:|.|:||.|.|..|... |:|...|:|| .:
 Frog   392 TSFLHQLKWVCKRSFKNLWRNPQASIAQVMVTLVLALIVGAIFFGVKEDVS-GIQNRVGSLF-FV 454

  Fly   451 SENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILA-LLPGMIIEPLIFVIICYWLTG 514
            :.|......|.:.||.....:|:.|..||.|....|:.|.:.. |||...:..:||..:.|::.|
 Frog   455 TTNQCFSSVSAIELFIVEKKIFIHEYISGYYRLSAYFFAKLFTDLLPMRTLPSIIFTSVIYFMIG 519

  Fly   515 LRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFNSVPLAMA-YLVPLDYIFMIT-SGIFIQVNSL 577
            .::|..||  ..|...|:|...||.....:.|.....:|:| .|:.:.::|||. ||:.:.:.| 
 Frog   520 FKATAGAF--FTMMFTLMMIAYTAASMALAVAAGQDVVAVANLLMTICFVFMIIFSGLLVNLTS- 581

  Fly   578 PVAFWWTQFLSWMLY---ANEAMTAAQWSGVQNI--------------TCFQESADLPCFHTGQD 625
             |..|    :||:.|   ....:||.|.:...|:              .|...|....|  ||::
 Frog   582 -VMDW----ISWLKYFSIPRYGLTALQINEFTNLNFCNGLNTTIQGNPNCTGSSPFGTC--TGEE 639

  Fly   626 VL--DKYSFNESNVYRNLLAMVGLYFGFHLLGYYCLW 660
            .|  ....|:...:::|.||:..:...|..:.|..|:
 Frog   640 YLTVQGIDFSTWGLWQNHLALACMIAIFLTIAYLKLY 676

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 84/208 (40%)
3a01204 67..665 CDD:273361 184/622 (30%)
ABC2_membrane 395..600 CDD:279410 59/212 (28%)
abcg2XP_012819987.2 3a01204 73..675 CDD:273361 183/619 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.010

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