DRSC/TRiP Functional Genomics Resources

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Protein Alignment st and Abca14

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:XP_017167760.1 Gene:Abca14 / 67928 MGIID:2388708 Length:1719 Species:Mus musculus


Alignment Length:830 Identity:155/830 - (18%)
Similarity:270/830 - (32%) Gaps:300/830 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly    91 INNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVV--QGDILINGRRIGPFMHRIS--- 150
            :|:.:..:..|.:..|:|.:|:||||.:|.|     .|..:  :|.:.|:|..|...|.:|.   
Mouse   575 VNDLSLNLYEGQITVLLGHNGAGKTTTLSIL-----TGLYLPTRGKVYISGYDISSDMVQIRKSL 634

  Fly   151 GYVYQDDLFLGSLTVLEHLNFMAHLR---LDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDD 212
            |...||||....|||.|||:|...::   |..: |:|..|     :|...|||..:.|.      
Mouse   635 GLCPQDDLLFPMLTVSEHLHFYCVIKGIPLQNQ-SRETNR-----MLTSFGLLQQSNTM------ 687

  Fly   213 KKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSS 277
            .|.||||.:::|:..:.|:.:..::..||||:|:|..|.:.....|....:..|.:|.|.|...:
Mouse   688 SKDLSGGMKRKLSIIIALIGDTKVVILDEPTSGMDPVSRRATWDLLQHYKKDRTILLTTHHMDEA 752

  Fly   278 QLFDNFNNVMLLADGRVAFTGSPQHALSFFANH----GYY-----CPEA-----------YNPAD 322
            .:..  :.:.:|..|.:...||     |.|...    ||:     .|::           |.|..
Mouse   753 DVLG--DRIAILVMGILKCCGS-----SLFLKKLYGVGYHLVIVKTPDSNDEKIFQLIKNYIPTA 810

  Fly   323 FLIGVLATDPGY---EQASQRSAQHLCD-----------QFAVS---------SAAKQRDMLVNL 364
            .:...:|.:..:   ::.:.|.|:...|           .|.||         ..:...|:.:|.
Mouse   811 KMETNVAAELSFILPKEHTHRFAELFTDLEEKQEELGISGFGVSMTTMDEVFFKVSNLEDLKLNT 875

  Fly   365 EI--------------------------------HMAQSGNFPFDTEVESFRGVAWYKRFHVVWL 397
            ||                                |:..|.|..:...::.||.: :.||....|.
Mouse   876 EIAPSASIVSQSSNEDNQNMNVPRNFERPGYSRRHLDSSFNAGWSLYIQQFRAM-FIKRVMFSWR 939

  Fly   398 RASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPS------QLG------------------ 438
            ...|.||:...:..|.::      .|.|..|:...||:      |.|                  
Mouse   940 YWKLLLLQLLALLGLMYL------LIKGISFSVPKEPARVMDLEQYGETIVPFSVSGDPNLTQIL 998

  Fly   439 --------------VQAVQG--------------------ALFIMISENT---------YHP--- 457
                          :..|||                    :|.:...|.|         ||.   
Mouse   999 TKNLETMLKAKKQKIHEVQGDMKNYLLTSKDCIYSCIVAFSLDVTTEEKTFIFWFNNEAYHAAPL 1063

  Fly   458 --------MYSVL-----------------------------------------NLFPQGFPLFM 473
                    :|..|                                         ::|..||.|..
Mouse  1064 SLSILDNIIYKYLSGPDATITVSNNPQPQRVTKDKSNERSISGIQIVFNLLFGMSIFTSGFCLMT 1128

  Fly   474 RETR----------SGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMC 528
            ...|          ||:|:...:.:|.:..|:...:...|:.|:..|....:....|.|..|...
Mouse  1129 VTERVSKAKHIQFVSGVYTLNFWLSALLWDLIIHFVACVLLLVVFLYTDVDILLEKYHFLDTMFI 1193

  Fly   529 VVL----VMNVATACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQ--FL 587
            ::|    ::........:::.:.|:......:...|.:|.:|...:   |..:|.....|:  .|
Mouse  1194 LMLFGWSIIPFIYLLSFWYNNSTNAYIKIFVFNHCLGFISIIVDAV---VQIIPDIKTSTKNLIL 1255

  Fly   588 SWMLYA---NEAMTAAQWSGVQNI--------------TCFQESADLPCFHTGQDVLDKYSFNES 635
            :.||..   |..|:..::..:..|              :|..:..|:|.          ||.|:.
Mouse  1256 NSMLLLPIYNFGMSIYKYYNIHEIRKLCSSLGYINTIPSCKSQIIDIPI----------YSMNQK 1310

  Fly   636 NVYRNLLAMVG---LYF------------------GFHLLGYYCLWRRAR 664
            .:.|::.||..   :||                  .:.|.|.|.::.:||
Mouse  1311 AIGRHVTAMAATGLIYFILIILLETTSWNLKIFIYRYVLFGIYRIFYKAR 1360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 60/214 (28%)
3a01204 67..665 CDD:273361 155/830 (19%)
ABC2_membrane 395..600 CDD:279410 51/342 (15%)
Abca14XP_017167760.1 rim_protein <128..1709 CDD:130324 155/830 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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