DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and ABCG4

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_001135977.1 Gene:ABCG4 / 64137 HGNCID:13884 Length:646 Species:Homo sapiens


Alignment Length:671 Identity:196/671 - (29%)
Similarity:330/671 - (49%) Gaps:86/671 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 ERVEQHELQVMPVGSTIEVPSLDSTPKLSKRNSSERSLPLRSYSKWSPTEQGATLVWRDLCVYTN 79
            ::||.|            :........|.||::.:......|||    ..:|.  .||.      
Human    38 KKVENH------------ITEAQRFSHLPKRSAVDIEFVELSYS----VREGP--CWRK------ 78

  Fly    80 VGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING--RRI 142
                 :..|.::...:|......|:.:||.||:||:|.|:.||..:.:|  ::|.||:||  |.:
Human    79 -----RGYKTLLKCLSGKFCRRELIGIMGPSGAGKSTFMNILAGYRESG--MKGQILVNGRPREL 136

  Fly   143 GPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRI 207
            ..| .::|.|:.|||:.|..|||||.:...|:|:|..:  :|.::.::.|:|...||:|.:.||.
Human   137 RTF-RKMSCYIMQDDMLLPHLTVLEAMMVSANLKLSEK--QEVKKELVTEILTALGLMSCSHTRT 198

  Fly   208 GSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTI 272
            .      :||||:|||||.|:||:|||.::|.||||:||||.|..|:|:.:..|||.|.||:|||
Human   199 A------LLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCFQVVSLMKSLAQGGRTIICTI 257

  Fly   273 HQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATDPG-YEQ 336
            ||||::||:.|:.:.:|:.|:..|.|...:.:.:....|.:||..:|||||:|.|.:.:.| ...
Human   258 HQPSAKLFEMFDKLYILSQGQCIFKGVVTNLIPYLKGLGLHCPTYHNPADFIIEVASGEYGDLNP 322

  Fly   337 ASQRSAQH-LCDQFAVSSAAKQRDMLVNL-----EIHMAQSGNFPFDTEVESFRGVAWYKRFHVV 395
            ...|:.|: ||......|:.::.::....     |:...:|..|...|          ..:|.::
Human   323 MLFRAVQNGLCAMAEKKSSPEKNEVPAPCPPCPPEVDPIESHTFATST----------LTQFCIL 377

  Fly   396 WLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQ-----GALFIMISENTY 455
            :.|..|::|||..:..|||:..:.:..:||..:.      .:|..|.:     |.||..:....:
Human   378 FKRTFLSILRDTVLTHLRFMSHVVIGVLIGLLYL------HIGDDASKVFNNTGCLFFSMLFLMF 436

  Fly   456 HPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGL---RS 517
            ..:...:..||....:||||..:..||...||.|..:|.:|..::.|:::..|.||:||.   .|
Human   437 AALMPTVLTFPLEMAVFMREHLNYWYSLKAYYLAKTMADVPFQVVCPVVYCSIVYWMTGQPAETS 501

  Fly   518 TFYAFGVTAMCVVLVMNVATACGCFFSTAFNSVPLAMAYLVPLDYI-FMITSGIFIQVNSLPVAF 581
            .|..|...|....|   ||.:.|.....|.||:.:| .::.|:..| .::.||.|:...::|...
Human   502 RFLLFSALATATAL---VAQSLGLLIGAASNSLQVA-TFVGPVTAIPVLLFSGFFVSFKTIPTYL 562

  Fly   582 WWTQFLSWMLYANEAMTAAQWSGVQ--NITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAM 644
            .|:.:||::.|..|.:....: |::  ::||.:|...   |...|.:|......::.:|.:.| :
Human   563 QWSSYLSYVRYGFEGVILTIY-GMERGDLTCLEERCP---FREPQSILRALDVEDAKLYMDFL-V 622

  Fly   645 VGLYF-GFHLLGYYCLWRRAR 664
            :|::| ...||.|..|..|.:
Human   623 LGIFFLALRLLAYLVLRYRVK 643

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 92/233 (39%)
3a01204 67..665 CDD:273361 186/619 (30%)
ABC2_membrane 395..600 CDD:279410 57/213 (27%)
ABCG4NP_001135977.1 3a01204 44..646 CDD:273361 193/653 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165141421
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
54.740

Return to query results.
Submit another query.