DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and abcg5

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_001122162.1 Gene:abcg5 / 557317 ZFINID:ZDB-GENE-050517-40 Length:652 Species:Danio rerio


Alignment Length:608 Identity:178/608 - (29%)
Similarity:285/608 - (46%) Gaps:62/608 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    71 WRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDI 135
            |.||..:..     :..::|:|..:..:..|.:|.::|:||||||||:..:|.|......:||::
Zfish    58 WWDLSSFRK-----KWTRQILNEVSFHLDSGQIMGILGNSGSGKTTLLDAIAGRIGNSGNLQGEV 117

  Fly   136 LINGRRI--GPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTG 198
            .:|||::  ..|....| ||.|.|..|..|||.|.|.:.|.|.| |:.|.|..|..:..::....
Zfish   118 FVNGRKLKREQFQDCFS-YVLQSDNLLSYLTVEETLTYTAQLAL-RKHSAEAIRKKVTAVMAELS 180

  Fly   199 LLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQ 263
            |...|.:.|| |.....:|||||:|::.|.:||.:|.::..|||||||||.:|.|:|..|.|||:
Zfish   181 LGHVAHSVIG-GRVFPGISGGERRRVSIASQLLQDPKVILLDEPTTGLDSMTANQIVMLLAELAR 244

  Fly   264 KGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVL 328
            :...::.|||||.|:||..||.:.:::.|.:.|.|.|...:.||::.||.|||..||.|..:.:.
Zfish   245 RDRIVIVTIHQPRSELFRIFNRIAIMSQGELVFCGEPHKMVDFFSSCGYECPEYCNPFDIYVDLT 309

  Fly   329 ATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMAQSGN------FPFDTEVESFRGVA 387
            :.|   .:.|:|.|........::||.:..::..|::..:.||..      .||.:: ||...::
Zfish   310 SVD---TRCSEREAATYRRMHDITSAYQNSEIYTNMQEKIEQSCQRPDKPMIPFKSK-ESPNCIS 370

  Fly   388 WYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGA------- 445
               :..|:..|....:.||.....:|..|.:.....| |.|.     .:||....:||       
Zfish   371 ---KLGVLLRRTFRNVSRDRMGILMRLSQNLIYGLFI-AFFL-----MRLGKDVTKGAVQDRIGL 426

  Fly   446 LFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICY 510
            ::..:..:.|..|.:.:.|||....:..:|::.|||...|.:.|.|:.:||..||...||....|
Zfish   427 IYQSMGASPYTGMLNAVALFPALRAISDQESKDGLYQKWQMFLAYIIHILPFSIISVFIFASFLY 491

  Fly   511 WLTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTAF-------NSVPLAMAYLVPLDYIFMITS 568
            |..|:......|    :|...|:.|....|...:...       |.|...:|.|....  .|:.|
Zfish   492 WTVGMNPDPVRF----LCFSAVVMVPHIIGELLTLVLLGVVQDPNMVNSGVALLNIAG--IMVGS 550

  Fly   569 GIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQNITCFQESADLP--CF-HTGQDVLD-- 628
            |.......:||.|.|..:|::..|..|.:...::.|: |.|| ...|.||  |. .:|..::|  
Zfish   551 GFLRGFKQMPVVFQWLSYLTFQKYGCELLIVTEFYGL-NFTC-TPIAGLPGECLVDSGNMIIDQG 613

  Fly   629 ------KYSFNESNVYRNLLAMV 645
                  :|:.:...:|..|.|:|
Zfish   614 YPGALSRYTQDFLLLYAFLPALV 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 85/228 (37%)
3a01204 67..665 CDD:273361 178/608 (29%)
ABC2_membrane 395..600 CDD:279410 52/218 (24%)
abcg5NP_001122162.1 3a01204 50..645 CDD:273361 178/608 (29%)
ABCG_White 53..279 CDD:213201 85/228 (37%)
ABC2_membrane 375..582 CDD:279410 52/218 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 94 1.000 Domainoid score I7419
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
54.920

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