DRSC/TRiP Functional Genomics Resources

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Protein Alignment st and CG8908

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_611464.3 Gene:CG8908 / 37293 FlyBaseID:FBgn0034493 Length:1626 Species:Drosophila melanogaster


Alignment Length:391 Identity:80/391 - (20%)
Similarity:140/391 - (35%) Gaps:106/391 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 LMALMGSSGSGKTTLMSTLA-FRQPAGTVVQGDILINGRRIGPFMHRISGYVY---QDDLFLGSL 163
            :...:|.:.|||:|::..|| |.:|:.    |:|.|||..:.....:....:.   |.::....:
  Fly   501 ITVFLGHNDSGKSTILMLLAGFLRPSA----GEITINGYDLATNQRKARQSMCICPQPNVLFEKV 561

  Fly   164 TVLEHLNFMAHLR-LDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFA 227
            ....||.|...|: |:|:.:..|    ..:.||...|...|.|::      |.|..|.::.|...
  Fly   562 NARWHLQFYCRLKGLNRQEASAE----TDKYLEIGRLQDFANTKV------KNLPSGIKRMLMLC 616

  Fly   228 VELLNNPVILFCDEPTTGLDSYSAQQLVATLYEL---AQKGTTILCTIHQPSSQLFDNFNNVMLL 289
            ..|..|..||..|||.|.:|    ..:.:.:::|   .:||..|:...|        |.|...::
  Fly   617 CNLCGNSKILLLDEPGTSMD----PAMRSNMWDLLRRERKGRCIIMATH--------NMNEAEVV 669

  Fly   290 ADGRVAFTGSPQHALSFFANHGYYCPE---AYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAV 351
            ||..|..                 |..   .|....||..:..|...|        ..:|.:.  
  Fly   670 ADQIVVL-----------------CDAQVIGYGTTGFLTQIAGTGSSY--------LLICTKM-- 707

  Fly   352 SSAAKQRDMLVNLEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQ 416
                   |..:..|:.......||   :::.....:.|..:.:            ||    :::|
  Fly   708 -------DTCIVAEVTNFLQIRFP---DIKLHNEFSIYVTYEL------------PT----KYVQ 746

  Fly   417 KIAMAFIIGACFAGTTEPSQLGVQA-VQGALFIMISE---------------NTYHPMYSVLNLF 465
            :.|..|:......|....:::.|.| ..|::|:.:.|               ::..||.|:|||.
  Fly   747 QYAALFLELEEALGELNLAEISVCAPTLGSVFLQMGEEMRQSWNRISSFDLLSSPSPMLSLLNLL 811

  Fly   466 P 466
            |
  Fly   812 P 812

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 50/202 (25%)
3a01204 67..665 CDD:273361 80/391 (20%)
ABC2_membrane 395..600 CDD:279410 18/88 (20%)
CG8908NP_611464.3 ABC2_membrane_3 69..394 CDD:289468
LivG 471..686 CDD:223488 52/227 (23%)
ABC_subfamily_A 474..691 CDD:213230 53/232 (23%)
ABC2_membrane_3 845..1192 CDD:289468
NatA 1242..1461 CDD:226927
ABC_subfamily_A 1242..1459 CDD:213230
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

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