DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and Atet

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_001097079.1 Gene:Atet / 33636 FlyBaseID:FBgn0020762 Length:832 Species:Drosophila melanogaster


Alignment Length:829 Identity:199/829 - (24%)
Similarity:345/829 - (41%) Gaps:206/829 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 EAPERVEQHELQVMPVG----------STIEVPSLDSTPK-LSKRNSSERSLPLRSYSK-WSPTE 64
            ::|.||........|..          ||:...|.:..|. .:..||.:..:||.|..| .:..:
  Fly    26 KSPNRVSDSAATTAPNAVLYTSGNMSLSTLSTGSGNPNPNPNASTNSRQEPVPLLSQLKLTNDLK 90

  Fly    65 QGATLVWRDLC--------------VYTNVGGS--GQR--------------------------- 86
            |.:.....:||              |..|.|||  ||:                           
  Fly    91 QNSHGSQNNLCNGGLGSNNHALAPKVANNSGGSPNGQKKGTIALSHLPQRPPVDIEFCDISYSVT 155

  Fly    87 ------MKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING--RRIG 143
                  .|.|:.:.:|..:.|.:.|:||.||:||:|||:.||..:.|  .:.|.:|||.  |.:.
  Fly   156 DSHRRGFKTILKSVSGKFRNGEITAIMGPSGAGKSTLMNILAGYKTA--QLSGSVLINSKERNLR 218

  Fly   144 PFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIG 208
            .| .::|.|:.|||:.:.:|||.|.:...|:|:|.:.:....:.::::|:||..||..:..|...
  Fly   219 RF-RKLSCYIMQDDVLIANLTVREAMMVAANLKLGKNMISYAKVVVVEEILETIGLKESVNTLTC 282

  Fly   209 SGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIH 273
            :      ||||:||||:.|:||:|||.::|.||||:||||.:..||::.|..||:.|.||:||||
  Fly   283 N------LSGGQRKRLSIALELVNNPPVMFFDEPTSGLDSSTCFQLISLLRSLARGGRTIVCTIH 341

  Fly   274 QPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATDPGYEQAS 338
            |||::||:.|:::.|||.|:..:.|..:..:.:.::.||.||..:||||:::.|.:.:.|     
  Fly   342 QPSARLFEKFDHLYLLAQGQCVYEGRVKGLVPYLSSLGYECPSYHNPADYVLEVASGEYG----- 401

  Fly   339 QRSAQHLCDQFAVSSAAKQRDMLVNLEIHMAQSG------------------------------- 372
             .:...|.|  ||.|.|.::....:..:.:||.|                               
  Fly   402 -DAVPKLVD--AVKSGACKKYAHKDYVLTLAQKGCNNDIIKGSGSGAENAMAILTLEDEKPPLED 463

  Fly   373 -----NFPFDTEVE---------------------------------SFRG-------------- 385
                 :.|.|...|                                 |.:|              
  Fly   464 RQLEPSIPVDDPAELKPPKLETQQSQNSDCSVVNMPTNAVDDSCSFSSSKGTQNAVGGSGSGGPS 528

  Fly   386 --------------------------VAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFII 424
                                      .:.:.:|.::..|:..|:|||..:..:|....:.:..||
  Fly   529 AVVGCMTSLLDSHESVVTLPNKTGFPTSGWTQFWILLKRSFRTILRDKMLTHMRLFSHVIVGAII 593

  Fly   425 GACFAGT-TEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYA 488
            |..:... .|.|::...|  |.:|.:....|:..|...:..||....:|:||..:..||...:|.
  Fly   594 GMIYYDVGNEASKIMSNA--GCIFFVSLFTTFTAMMPTILTFPTEMSVFVREHLNYWYSLKAFYF 656

  Fly   489 ANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFN---SV 550
            |..:|.:|..|:...::|::.|:||..........:..:..||...||.:.|.......|   .|
  Fly   657 AKTIADMPFQIVFSSVYVLVVYYLTSQPMELERVSMFVLICVLNSLVAQSLGLLIGAGMNIETGV 721

  Fly   551 PLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANE-AMTAAQWSGVQNITCFQES 614
            .|.....:|.    ::.||.|:..:::|....|..::|::.|..| ||.|........:.|.|  
  Fly   722 FLGPVTTIPT----ILFSGFFVNFDTIPGYLQWVTYVSYVRYGFEGAMVAIYGMDRAKMQCNQ-- 780

  Fly   615 ADLPC-FHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCL-WR 661
              :.| :...:..|::.|.:.:..:.:.:|::|::|...::.|:.| |:
  Fly   781 --MYCHYRVPKKFLEEMSMDNALFWVDAVALIGIFFALRIIAYFVLRWK 827

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 95/282 (34%)
3a01204 67..665 CDD:273361 184/762 (24%)
ABC2_membrane 395..600 CDD:279410 51/209 (24%)
AtetNP_001097079.1 3a01204 137..825 CDD:273361 173/714 (24%)
ABCG_EPDR 142..366 CDD:213180 86/232 (37%)
ABC2_membrane 564..767 CDD:279410 51/208 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45438918
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 1 1.000 - - mtm14984
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
76.840

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