DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and w

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_476787.1 Gene:w / 31271 FlyBaseID:FBgn0003996 Length:687 Species:Drosophila melanogaster


Alignment Length:645 Identity:236/645 - (36%)
Similarity:356/645 - (55%) Gaps:51/645 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 SPTE----------QGATLVWRDLCVY--TNVGGSGQRM-------------------KRIINNS 94
            ||.|          :..|..|.::.::  .|..|||.|.                   |.::.|.
  Fly    52 SPPEDSGSGSGQLAENLTYAWHNMDIFGAVNQPGSGWRQLVNRTRGLFCNERHIPAPRKHLLKNV 116

  Fly    95 TGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVV--QGDILINGRRI-GPFMHRISGYVYQD 156
            .|...||.|:|:|||||:|||||::.||||.|.|..|  .|..|:||:.: ...|.....||.||
  Fly   117 CGVAYPGELLAVMGSSGAGKTTLLNALAFRSPQGIQVSPSGMRLLNGQPVDAKEMQARCAYVQQD 181

  Fly   157 DLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGER 221
            |||:||||..|||.|.|.:|:.|.::..:|...:.::::...|.....|.||.....|.||||||
  Fly   182 DLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQELSLSKCQHTIIGVPGRVKGLSGGER 246

  Fly   222 KRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNV 286
            ||||||.|.|.:|.:|.|||||:||||::|..:|..|.:|:|||.|::.|||||||:||:.|:.:
  Fly   247 KRLAFASEALTDPPLLICDEPTSGLDSFTAHSVVQVLKKLSQKGKTVILTIHQPSSELFELFDKI 311

  Fly   287 MLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAV 351
            :|:|:|||||.|:|..|:.||:..|..||..||||||.:.|||..||.|..|:.....:||.||:
  Fly   312 LLMAEGRVAFLGTPSEAVDFFSYVGAQCPTNYNPADFYVQVLAVVPGREIESRDRIAKICDNFAI 376

  Fly   352 SSAAKQRDMLV---NLEIHMAQSGN-FPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWL 412
            |..|:..:.|:   |||..:.|..| :.:.        ..|:.:|..|..|:.|::|::|.:..:
  Fly   377 SKVARDMEQLLATKNLEKPLEQPENGYTYK--------ATWFMQFRAVLWRSWLSVLKEPLLVKV 433

  Fly   413 RFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETR 477
            |.||...:|.:||..|.| .:.:|:||..:.||:|:.::..|:..:::.:|:|....|:||||.|
  Fly   434 RLIQTTMVAILIGLIFLG-QQLTQVGVMNINGAIFLFLTNMTFQNVFATINVFTSELPVFMREAR 497

  Fly   478 SGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVVLVMNVATACGCF 542
            |.||....|:....:|.||..:..||:|..|.|.:.|||:....|......|.||.||:|:.|..
  Fly   498 SRLYRCDTYFLGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANVSTSFGYL 562

  Fly   543 FSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQ- 606
            .|.|.:|..:|::...|:...|::..|.|:...|:||...|..:|||..||||.:...||:.|: 
  Fly   563 ISCASSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYLKWLSYLSWFRYANEGLLINQWADVEP 627

  Fly   607 -NITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCLWRRARK 665
             .|:|  .|::..|..:|:.:|:..:|:.:::..:.:.:..|...|.:|.|..|..|||:
  Fly   628 GEISC--TSSNTTCPSSGKVILETLNFSAADLPLDYVGLAILIVSFRVLAYLALRLRARR 685

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 110/255 (43%)
3a01204 67..665 CDD:273361 232/627 (37%)
ABC2_membrane 395..600 CDD:279410 70/204 (34%)
wNP_476787.1 3a01204 68..687 CDD:273361 233/629 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45454589
Domainoid 1 1.000 116 1.000 Domainoid score I1972
eggNOG 1 0.900 - - E2759_KOG0061
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 304 1.000 Inparanoid score I769
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 1 1.000 - - mtm6474
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
109.900

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