DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and Abca16

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:XP_038957107.1 Gene:Abca16 / 293444 RGDID:1563534 Length:1680 Species:Rattus norvegicus


Alignment Length:849 Identity:161/849 - (18%)
Similarity:288/849 - (33%) Gaps:289/849 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 PKLSKRNSSERSLP-LRSYSKWSPTEQGATLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTL 103
            ||:.|.....:|:| :.:..:..|:...|.:..:.|       ....:.|..|||.:..|..|.:
  Rat   486 PKIRKIGEEAKSIPVVHNCYEAEPSNLEAGIQIKHL-------HKEFKTKPAINNLSLNIYEGQV 543

  Fly   104 MALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHRIS---GYVYQDDLFLGSLTV 165
            ..|:|.:|:||||.:|.|..|..|   .:|:..|||..|...|..|.   |:..|.||....||:
  Rat   544 TVLLGHNGAGKTTTLSVLTGRFAA---TRGEAYINGYNISDNMAEIRKDLGFCPQHDLLFDDLTL 605

  Fly   166 LEHLNFMAHLR-LDRRVSKEE--RRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFA 227
            .|||.|...:: ..:.::..|  |.|.:..|.|....||.:            :|||.|::|:..
  Rat   606 SEHLFFYCMIKGHPQNINCVEINRMLSVFNLQENYHTLSGS------------VSGGVRRKLSII 658

  Fly   228 VELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLLADG 292
            :.|:....::..|||::|:|..|.:.....|....|..|.:|.|.:...:.:..  :.:.::..|
  Rat   659 LALMGGSKVVILDEPSSGMDPMSRRATWDILQHYKQNRTILLTTHYMDEADVLG--DRIAIMVRG 721

  Fly   293 RVAFTGSPQHALSFFANH----GYYC---PEAYNPADFLI---------GVLATDPGYE------ 335
            .:...||     |.|...    ||:.   .|.|...|.:|         .:|..|.|.|      
  Rat   722 TLHCCGS-----SVFLKQIYGAGYHIVLEKEPYCDVDNIIAMIQQHVPGSMLENDIGNELSFILP 781

  Fly   336 -------------------------------------------QASQRSAQHLCDQFAVSSAAKQ 357
                                                       .|.|||.|.:...:......:|
  Rat   782 KKYVSRFETLFTELEMRQKALGIANFGASITTMEEVFLKVNKLAAPQRSIQTIQPYYLTYKKMRQ 846

  Fly   358 RDMLVNLEIHMAQSGN---FPFDTEVESFR---GVAWYK-RFHVVWLRASLTLLRDPTIQWLRFI 415
            .:   ...:::.::.|   ||:..|:.:.:   ||..|: :|:.::::.:|.:.|:..:.:|:.|
  Rat   847 DE---QQNVNILRNYNKPIFPYLREIATVKFNTGVPLYRQQFYSMFIKRALFIGRNWKLMFLQII 908

  Fly   416 QKIAMA--------------------------FIIGACFAGTTE--------------PSQLGVQ 440
            ..:.:.                          .|:....:|.::              .....::
  Rat   909 VVLVVTTYLLLSLHLDDNDIPERELNLSHYGKTIVPYSISGNSDLALNLIKNLKIFLKSKNQSLK 973

  Fly   441 AVQG------------------ALFIMISEN-----------TYHPMYSVLNLFPQGFPLFM--- 473
            .::|                  ||.|.:..|           .||.....|::...  .|||   
  Rat   974 KIKGDMNNYILENKDCRTFCIIALSIKVERNKTVLTIFFNNEAYHSPAISLSILDN--ILFMTLS 1036

  Fly   474 -RETRSGLYSTGQ---YYAANILALLPGMIIEPLIFVI--------------------------- 507
             |:.....::..|   :|.:|.:.:....|::.|.|.|                           
  Rat  1037 GRDASITAFNKPQPLPHYGSNTVPVNGLQIVQCLAFGISVVVGSFSIQTVTERISQAKHIQFLTG 1101

  Fly   508 IC---YWLTGLRS--TFYAFGVTAMCVVLVMNVATACGCF-------FSTAFN---SVPLAMAY- 556
            :|   |||:.|..  .|:.|   |.||:|        |.|       |...:|   ::.:.|.| 
  Rat  1102 VCVLTYWLSALLCDLIFFFF---ACCVLL--------GIFRFCQLEAFVVHYNFLDTILIFMLYG 1155

  Fly   557 --LVPLDYIFMITSGIFIQVNSLPVAF-------WWTQFLSWMLYANEAMTAAQWSGVQNITCFQ 612
              :|||.|:     |.|: .||...|:       :::...|.::|.........:..:.:|....
  Rat  1156 WCVVPLTYL-----GSFL-FNSSTAAYIKITLFNYFSTMFSIIIYTIVQFYGEDFPALIHILIKT 1214

  Fly   613 ESADLPCFHTGQDV---LDKYS-------------------FNESNVYRNLLAMVGLYFGFHLLG 655
            ....||.::....:   .|.|.                   |.::|||.         ||.|.:|
  Rat  1215 ILMALPSYNLAMSISKYFDDYEVKRLCAREFRSIYMDCSEPFIQNNVYG---------FGEHGIG 1270

  Fly   656 YYCL 659
            .:.:
  Rat  1271 KFLI 1274

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 61/237 (26%)
3a01204 67..665 CDD:273361 155/821 (19%)
ABC2_membrane 395..600 CDD:279410 53/332 (16%)
Abca16XP_038957107.1 rim_protein <163..1664 CDD:130324 161/849 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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