DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and Abcg5

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_114090.1 Gene:Abcg5 / 27409 MGIID:1351659 Length:652 Species:Mus musculus


Alignment Length:560 Identity:165/560 - (29%)
Similarity:268/560 - (47%) Gaps:56/560 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 NVGGSGQRMKR-IINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILING--R 140
            |:....|:..| |:.:.:..|:.|.:|.::||||||||||:..::.|......::|::.:||  .
Mouse    57 NIKSCQQKWDRQILKDVSLYIESGQIMCILGSSGSGKTTLLDAISGRLRRTGTLEGEVFVNGCEL 121

  Fly   141 RIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQT 205
            |...|....| ||.|.|:||.||||.|.|.:.|.|.|.|. |.:.....::.::....|...|..
Mouse   122 RRDQFQDCFS-YVLQSDVFLSSLTVRETLRYTAMLALCRS-SADFYNKKVEAVMTELSLSHVADQ 184

  Fly   206 RIGS---GDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTT 267
            .|||   |.    :|.|||:|::.|.:||.:|.::..||||||||..:|.|:|..|.|||::...
Mouse   185 MIGSYNFGG----ISSGERRRVSIAAQLLQDPKVMMLDEPTTGLDCMTANQIVLLLAELARRDRI 245

  Fly   268 ILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLATDP 332
            ::.|||||.|:||.:|:.:.:|..|.:.|.|:|:..|.||.|.||.|||..||.||.:.:.:.| 
Mouse   246 VIVTIHQPRSELFQHFDKIAILTYGELVFCGTPEEMLGFFNNCGYPCPEHSNPFDFYMDLTSVD- 309

  Fly   333 GYEQASQRSAQHLCDQFAVSSAAKQRD----MLVNLE--IHMAQSGNFPFDTEVESFRGVAWYKR 391
              .|:.:|..:.......:..|.|:.|    :|.|:|  .::......||.|:...    ..:.:
Mouse   310 --TQSREREIETYKRVQMLECAFKESDIYHKILENIERARYLKTLPTVPFKTKDPP----GMFGK 368

  Fly   392 FHVVWLRASLTLLRDPTIQWLRFIQKIAMA-FIIGACFAGTTEPSQLGVQAVQGALFIMISENTY 455
            ..|:..|.:..|:|:.....:|.:|.:.|. |:|...........:..||...|.|:.::....|
Mouse   369 LGVLLRRVTRNLMRNKQAVIMRLVQNLIMGLFLIFYLLRVQNNTLKGAVQDRVGLLYQLVGATPY 433

  Fly   456 HPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFY 520
            ..|.:.:||||....:..:|::.|||...|...|.:|.:||..:|..:||..:|||..||.....
Mouse   434 TGMLNAVNLFPMLRAVSDQESQDGLYHKWQMLLAYVLHVLPFSVIATVIFSSVCYWTLGLYPEVA 498

  Fly   521 AFG---------------VTAMCVVLVMNVATACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGI 570
            .||               :|.:.:.:|.|         ....||: :|:..:..|    :|.||.
Mouse   499 RFGYFSAALLAPHLIGEFLTLVLLGIVQN---------PNIVNSI-VALLSISGL----LIGSGF 549

  Fly   571 FIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQNITC 610
            ...:..:|:......:.::..|..|.:...::.|: |.||
Mouse   550 IRNIQEMPIPLKILGYFTFQKYCCEILVVNEFYGL-NFTC 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 83/224 (37%)
3a01204 67..665 CDD:273361 165/560 (29%)
ABC2_membrane 395..600 CDD:279410 50/220 (23%)
Abcg5NP_114090.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..25
ABCG_White 50..276 CDD:213201 83/224 (37%)
3a01204 61..646 CDD:273361 164/556 (29%)
ABC2_membrane 372..579 CDD:279410 50/220 (23%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 90 1.000 Domainoid score I7740
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3467
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
76.870

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