DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and Abcg3

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:XP_017176394.1 Gene:Abcg3 / 27405 MGIID:1351624 Length:683 Species:Mus musculus


Alignment Length:645 Identity:174/645 - (26%)
Similarity:294/645 - (45%) Gaps:129/645 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 VEQHELQVMPVGSTIEVPSLDSTPKLSKRNSS-----ERSLPLRSYSKWSPTEQGATLVWRDLCV 76
            :|:| |..:|..:|.::.:|.....||..|.|     :...|||         :.|.::.|    
Mouse    86 IERH-LCDLPETNTSDLKTLTEEAVLSFHNISYQETVQSGFPLR---------KKAYVIER---- 136

  Fly    77 YTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQ-PAGTVVQGDILINGR 140
                          ::|.:|.::|| |.|:||.....::.|:..||.|: |.|  :.|||||||:
Mouse   137 --------------LSNISGIMKPG-LNAIMGPQDGSRSLLLDVLAARRDPRG--LSGDILINGK 184

  Fly   141 RIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQT 205
            .........||||.|:|:.||::||.::|.|.|.|||...::::|:|..|.|:||   ||     
Mouse   185 PRPANFKCTSGYVPQNDVVLGTVTVRDNLEFSAALRLPVTITRDEKRRRINEVLE---LL----- 241

  Fly   206 RIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILC 270
            .:....:.|..|...|||.:.|:||:....|||.|:||||||..:...::..|..:::||.||:.
Mouse   242 HLNKEQNIKPRSKELRKRTSIAMELVTEHPILFLDDPTTGLDLRTTTDVILVLRRMSKKGRTIIF 306

  Fly   271 TIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVL------- 328
            :|:||...:|..|:::.|:|.|:|.|.|..|.||.:|.:.||......|||||.:.|:       
Mouse   307 SINQPQYSIFKFFDSLTLVASGKVMFHGPAQDALEYFRSAGYNYESHNNPADFFLDVINGGFSNI 371

  Fly   329 -------ATDPGYEQASQRSAQ---HLCDQFAVSSA-AKQRDMLVNL--EIHMAQSGNF------ 374
                   ..|..||:..:|..|   .|.:.:|.|.. ::.|.:|..|  |..:.:|...      
Mouse   372 LDTEEDGHEDDKYEELFERQYQVTGKLANMYAQSPLYSETRAILDQLLGEQKLERSSAVETTCVT 436

  Fly   375 PFDTEV--------ESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGT 431
            ||..::        ::|:|..|     |..::|.:|::               :|..:|..|. .
Mouse   437 PFCHQLKWIICQSFKNFKGFPW-----VTVIQAIITVI---------------LATAVGTAFR-V 480

  Fly   432 TEPSQLGVQAVQGALFIMISENTYHPMYSVL--NLFPQGFPLFMRETRSGLYSTGQYYAANILA- 493
            .:...:.||...|.|:::   ..:..:.||.  .||......|:.|..||.|....|:...:|| 
Mouse   481 LKNDCIEVQMRAGLLYLL---TIFQCITSVSAGELFVIDRVRFLHEHTSGYYRVSSYFFGKLLAE 542

  Fly   494 LLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTAFNSVPLAM---- 554
            |:|..::...:|.:|.|.:.|::.:...| .|.:|.::|:          :.:.:|:||::    
Mouse   543 LIPRRLLPSTVFSLITYVIAGVKMSMKCF-FTMICTIMVL----------AYSASSLPLSIGAGE 596

  Fly   555 ------AYLVPLDYIFMI-TSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQN 607
                  ..||.:.::||: .||:.:...|......|.|:.|...|...|:...::.| ||
Mouse   597 NAVAVPTLLVTIYFVFMLFFSGLSLYSGSFLPKLSWIQYFSIPHYGFRALLHNEFLG-QN 655

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 80/232 (34%)
3a01204 67..665 CDD:273361 161/590 (27%)
ABC2_membrane 395..600 CDD:279410 46/218 (21%)
Abcg3XP_017176394.1 3a01204 137..670 CDD:273361 159/566 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
54.810

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