DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and pdr1

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_593995.1 Gene:pdr1 / 2543363 PomBaseID:SPAPB24D3.09c Length:1396 Species:Schizosaccharomyces pombe


Alignment Length:742 Identity:183/742 - (24%)
Similarity:309/742 - (41%) Gaps:144/742 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 RIDVEAPERVEQHELQVMPVGSTIEVPSLDSTPKLSKRNSSERSLPLRSYSKWSPTEQGATLVWR 72
            |..|..||  .|.......|.|:..:...|..|..::.::.:..:     |....|.....|.||
pombe   704 RESVHIPE--FQKRKSYSQVASSFLIEPQDKPPSQTEPDNKKVDV-----STTLSTNDNLVLCWR 761

  Fly    73 DL--CVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDI 135
            ||  .|.|...     .|:|:.|.:|.::..||.||:|.:.|||:.|:..|:.|..||: |:|:|
pombe   762 DLNFTVVTKTS-----KKQILTNVSGYLKKNTLTALLGENKSGKSVLLRILSQRGIAGS-VEGEI 820

  Fly   136 LINGRRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLL 200
            .::|.:....:.:..|||.::.||:...||.|.|...|.||..::.|..|:...::.:::..||.
pombe   821 TLSGLKNPKNLRKRIGYVRKNPLFISEYTVRETLRLHAALRQSKQRSLSEQYAYVEYVIDFLGLG 885

  Fly   201 SAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNP-VILFCDEPTTGLDSYSAQQLVATLYELAQK 264
            ..|...:  ||..|.||...::.|:.||||...| .||..|||..||||.||..||..|.:||:.
pombe   886 EVADFIV--GDMGKGLSLYHKRLLSIAVELSARPGSILLLDEPANGLDSQSAWMLVCILQKLARS 948

  Fly   265 GTTILCTIHQPSSQLFDNFNNVMLL-ADGRVAFTGSPQHALSFFAN-----HGYYCPEAYNPADF 323
            |.:|||::.||||::.:.|:.:::| .:|...:..:....||...|     ||.. ..:.:.|||
pombe   949 GLSILCSVSQPSSRILELFDMMLILDLNGNTVYYDTMGRDLSKLVNYFKRIHGTN-EHSKDTADF 1012

  Fly   324 L---IGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMAQ--SGNFPFDTEVESF 383
            :   |..|...|.::.|.         .:|.::..||....||..:...:  ..:||.:|...: 
pombe  1013 VLHCIQFLKQGPEFDYAG---------AWASTNTHKQIIEHVNFIMDNPELTDDDFPNETRFMT- 1067

  Fly   384 RGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALF- 447
               :::.:.:.:.:|..:...||.::...|....|....|||..|    ....:||:..|..:| 
pombe  1068 ---SFFFQIYKISMRNFVAYWRDSSLLRARVAFNIVAGLIIGFSF----YKQGVGVEETQNKMFS 1125

  Fly   448 ----IMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLI---F 505
                .:.|.:|.:.:......|...:..:  |..:.:||.    .|.|:|.   .::|.:|   |
pombe  1126 AYMLTVASTSTMNGLQPKFIYFRSIYEQY--EQNTAIYSR----TAFIIAF---FLVEAVINCCF 1181

  Fly   506 VIICYWLTGLRSTFYAF-------GVTAMCVVLVMNVATACGCFFSTAFNSVPLAMAYLVPLDYI 563
            ..:.::.....|.||.|       |..|..::::          |:..:.::.:.:|.:.|....
pombe  1182 ATLFFFGWYYPSGFYEFNHNIPFYGGFAWLMLMI----------FTLYYTTLGIGIATISPSIGT 1236

  Fly   564 FMITSG---IFIQ----VNSLP---VAFW-WTQFLSWMLYANEAMTAAQWSGVQN---ITC---- 610
            ..|.||   :|||    :..||   |.|| |...||...|..|.|.    .||.:   |||    
pombe  1237 ASIISGTAFVFIQYFNGMIQLPGVIVGFWKWMDALSPYKYFLEGMI----GGVLHDAPITCEKFE 1297

  Fly   611 ----------------------------FQESADLPC----FHTGQDVLDKYSFNESNVYRNLLA 643
                                        :...|...|    :....:::..:.::.::.:||...
pombe  1298 IHYVDPPPNYSCGEYFSSFLNSSGHGIVYNPEAYSSCQYCPYKNADELMVGFGYHYNHKWRNFCI 1362

  Fly   644 MVGLYFGFHLLG----YYCL----WRR 662
            |:| |..|:|..    ||.:    |:|
pombe  1363 MIG-YTAFNLGAAIALYYIIHKTPWKR 1388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 83/235 (35%)
3a01204 67..665 CDD:273361 172/683 (25%)
ABC2_membrane 395..600 CDD:279410 51/230 (22%)
pdr1NP_593995.1 3a01205 40..1382 CDD:273362 181/734 (25%)
ABCG_PDR_domain1 70..302 CDD:213200
ABC2_membrane 421..620 CDD:279410
PDR_CDR 634..>701 CDD:283960
ABCG_PDR_domain2 755..983 CDD:213199 83/235 (35%)
ABC2_membrane 1076..1284 CDD:279410 51/234 (22%)
PDR_CDR <1349..>1377 CDD:283960 7/28 (25%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 103 1.000 Domainoid score I1742
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9277
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
TreeFam 1 0.960 - -
43.960

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