DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and wht-8

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_499442.2 Gene:wht-8 / 189976 WormBaseID:WBGene00012925 Length:619 Species:Caenorhabditis elegans


Alignment Length:634 Identity:235/634 - (37%)
Similarity:341/634 - (53%) Gaps:45/634 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 LSKRNSSERSLPLRSYSKWSPTEQG--ATLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLM 104
            ||.|::....:.:|        ||.  .||.||:|.|.|..|      :.::|..:|...||.::
 Worm    13 LSARDTENNDIGVR--------EQDNLVTLQWRNLKVTTKAG------RVLLNGVSGCAVPGEVI 63

  Fly   105 ALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIGPFMHRISGYVYQDDLFLGSLTVLEHL 169
            ||||:||:|||||::||..|...|..|:|:||:||:.||..:..:|.||.|:|||:|:|||.|||
 Worm    64 ALMGASGAGKTTLLNTLLQRNLRGLQVEGEILVNGQNIGKGVTSVSAYVQQEDLFMGTLTVKEHL 128

  Fly   170 NFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNP 234
            :..|.|||....|...|...:.|::....|.....:|||....||.:||||.||||||.|::|||
 Worm   129 DIQAKLRLPPGTSTTARATRVNEVMNEMLLEKPRDSRIGVPGIKKGISGGEMKRLAFATEMINNP 193

  Fly   235 VILFCDEPTTGLDSYSAQQLVATLYELA-QKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTG 298
            .|:|||||||||||:.:.|:|.||.::| :||.||:||||||||::|:.|:.|:.||.||:||.|
 Worm   194 PIIFCDEPTTGLDSHMSLQVVKTLEQMALEKGKTIICTIHQPSSEVFEIFDKVVFLAQGRIAFHG 258

  Fly   299 SPQHALSFFANHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVN 363
            :...|:..|::.||..|:..||||:.|..||..|...:|.:...|.|||:|..|...::...|::
 Worm   259 AIDEAIHHFSSCGYQVPDHTNPADYFIDTLAIKPSEAEACKSRCQELCDKFEKSFYNERLTKLMD 323

  Fly   364 -------LEIHMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMA 421
                   :..|  .|..:|          |..|..|:    |..|..:|:|.|...:.|||:.|.
 Worm   324 QTKDVRAMTPH--HSATYP----------VLLYALFY----RYMLDNIRNPAIMKAKLIQKLFMG 372

  Fly   422 FIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQY 486
            ..||..|.| .|..|.|:.:.:||||..|||.||..::.:....|..:|..:||....:|....|
 Worm   373 LFIGTLFYG-LETDQDGLASYKGALFYYISELTYSTIFGIQAFMPADYPPLVREYDDRIYPISAY 436

  Fly   487 YAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAF-GVTAMCVVLVMNVATACGCFFSTAFNSV 550
            |.|.|.:.||...::.:|.|:..|:|.|..|.|..| .....|:.:..||| |.|........|.
 Worm   437 YIAKICSFLPIFTVDGIILVVSSYFLVGFPSDFGVFLRQIFTCMAIEWNVA-ALGIAVCATAPSY 500

  Fly   551 PLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQ--NITCFQE 613
            .:|:....||..:|.:|.|:|..:..:|....|.|:|||..|..|::...|:...|  ||||...
 Worm   501 AIAVTVTGPLLTVFSLTGGLFTNIAEMPAWINWVQYLSWFRYGYESLVVNQFQHDQFANITCNAN 565

  Fly   614 SADLPCFHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCLWRR 662
            ..:..|..:|...:..:||:.:|:|.|.:||:.|....:::||..|.||
 Worm   566 MNEQLCEKSGPIAIKNFSFDTANLYTNWVAMIYLTIIIYIVGYMGLVRR 614

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 114/234 (49%)
3a01204 67..665 CDD:273361 229/607 (38%)
ABC2_membrane 395..600 CDD:279410 66/205 (32%)
wht-8NP_499442.2 3a01204 22..615 CDD:273361 232/625 (37%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H104214
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53689
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.790

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