DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and wht-6

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_498425.2 Gene:wht-6 / 188911 WormBaseID:WBGene00007060 Length:613 Species:Caenorhabditis elegans


Alignment Length:620 Identity:203/620 - (32%)
Similarity:325/620 - (52%) Gaps:63/620 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 TLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQ 132
            :|.|.::.|.|.     :..:.::.|.:|..:.|.|:||||:||:|||||::.|..|...|...:
 Worm    33 SLHWNNITVTTI-----KEKRLLLKNVSGYAKSGELLALMGASGAGKTTLLNMLMCRNLKGLSTE 92

  Fly   133 GDILINGRRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERT 197
            |.|.:||..:...:..|||:..|::||:|:|||.|:|...|.||::.  ||:.|...:.::|.:.
 Worm    93 GTITVNGNEMAHKISSISGFAQQEELFVGTLTVKEYLMIQAKLRING--SKKLREDRVTDVLHQL 155

  Fly   198 GLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELA 262
            .|.....::||...:||.:||||.:||.||.|:|:||.:||.|||||||||:.|:.::..|..:|
 Worm   156 KLWKCRDSKIGVIGEKKGISGGEARRLTFACEMLSNPSLLFADEPTTGLDSFMAESVIQILKGIA 220

  Fly   263 QKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGV 327
            :.|.||:||||||||||:..|:.|:.||:|..||.|:||.::|||...|:..|:.|||::::|..
 Worm   221 KTGRTIICTIHQPSSQLYQMFHRVIYLANGSTAFQGTPQESISFFEKCGHRVPDEYNPSEWIIYK 285

  Fly   328 LATDPGYEQASQRSAQHLCDQFAVSSAAKQ-RDMLVNL-------EIHMAQSGNFPFDTEVESFR 384
            ||..||.|:.|....|.:.:|:..|...|: .:.|.::       |:|.|..             
 Worm   286 LAVQPGQEKQSNDRIQKIVEQYEDSDHQKRVMEQLSDVSEKIPPPEMHRANV------------- 337

  Fly   385 GVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALFIM 449
                :.:...:..|..:.:.|.|.:...:.||||.....||..:..|...:: |:..:.||||.:
 Worm   338 ----FTQIFALSTRCGIDVWRAPQLTLAKVIQKILFGLFIGLLYLRTPYDAR-GIHNINGALFFL 397

  Fly   450 ISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTG 514
            ..|..|...|:::......|||..||...|||:...||.|..::|:|....:.||.:.|.|||.|
 Worm   398 AGEYIYSTAYAIMFFLNNEFPLVAREYHDGLYNLWTYYFARCISLIPLFSTDGLILLFIVYWLIG 462

  Fly   515 LRSTFYAFGVTAMCVVLVMNVATACG----CFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVN 575
            |.::.....|.::..||....|:|.|    |.|.||..:..:|...||    :|.:..|::...|
 Worm   463 LNTSVMQVIVASIITVLASQAASAFGIAMSCIFPTAQMTAVMASPPLV----LFRLFGGLYGNTN 523

  Fly   576 SLPVAFWWTQFLSWMLYANEAMTAAQWSGVQNITCFQESADLPCFH----------TGQDVLDKY 630
            :.|.|..|.|::|...:|.|.:...|||.:.:            ||          |..||||.:
 Worm   524 TFPAAIRWLQWISMYRFAFEGLVVNQWSEIDD------------FHSNAKNNWTNSTTNDVLDYF 576

  Fly   631 SFNESNVYRNLLAMVGLYFGFHLLGYYCLWRRARK 665
            :|:||.:..:::.::.:...|:|:|:..|..|.:|
 Worm   577 AFSESAIPLDIIGLILISLAFYLIGFIALVHRMKK 611

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 96/229 (42%)
3a01204 67..665 CDD:273361 202/618 (33%)
ABC2_membrane 395..600 CDD:279410 62/208 (30%)
wht-6NP_498425.2 P-loop_NTPase <3..>81 CDD:393306 19/52 (37%)
3a01204 50..613 CDD:273361 199/598 (33%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H104214
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3467
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
87.730

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