DRSC/TRiP Functional Genomics Resources

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Protein Alignment st and abcx-1

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_495321.3 Gene:abcx-1 / 183860 WormBaseID:WBGene00006522 Length:710 Species:Caenorhabditis elegans


Alignment Length:668 Identity:132/668 - (19%)
Similarity:247/668 - (36%) Gaps:163/668 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 MKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRIG-PFMHRIS 150
            :|:.::|.:..:....::|:|.:..|...:|:..:...:.....:.||||:||.|:. ..:.:..
 Worm    96 LKQEVHNISFELSSSDVLAIMYTKESETISLLKIICGIKDVRGKLSGDILVNGHRMSRDRLEKTI 160

  Fly   151 GYVYQDDLFLGSLTVLEHL----NF----------MAHLRLDRRVSKEERRLIIKELLERTGLLS 201
            |:|..:.. ..:|:|.::|    ||          :.||              |.:|:...||..
 Worm   161 GFVSLESP-TSTLSVRQYLHVHGNFYPPMTERYGGVGHL--------------INKLMTDLGLFP 210

  Fly   202 AAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGT 266
            .:......      |:..:.:|:..|.:|:.:|.||.|.:....:|.:....|:..|.|.|.|..
 Worm   211 VSDIICSR------LNRSQWQRVKVASQLVRDPTILVCSDIFKDIDVHDQCFLIDYLREWAVKTN 269

  Fly   267 TILCTIHQPSS-QLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVLAT 330
            .|:.....|:| |:.:.|:..|:||.||:.:.|.|:....:|...|..||...|..|:.:.::..
 Worm   270 RIVIMAISPTSLQILNMFSKAMILASGRMIYFGPPKSMQQYFETIGCPCPPYKNVCDYYVDLVTH 334

  Fly   331 DPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNL------EIHMAQSGNFPFDTEVESFRGVAWY 389
            |.....||:.|:..:.             .|||.      .:....||.|..|.....       
 Worm   335 DNLTSDASRESSVRIA-------------RLVNKWNQTAPPVRRTASGKFLLDLPTAG------- 379

  Fly   390 KRFHVVWLRASLTLLRDPTIQWLRFIQKIA-----MAFIIGACFAGTTEPSQLGVQAVQGALFIM 449
                 :::.. |||:   ::.|..||...|     :.||.......:...|.|.:.....    .
 Worm   380 -----IFMNL-LTLI---SLFWFNFINNRASRIFFLLFIFSLSTCLSLHLSDLSLTLPDA----F 431

  Fly   450 ISENT-------YHPMY-SVLNL----FPQGFPLFMRETRSGLYSTGQYYAANILAL-------- 494
            ::.|:       |.|:: .::||    |...|..|.      |:.:.:::...:|.|        
 Worm   432 LNRNSYLELLIFYVPLFIGLVNLKKCTFLSEFDKFY------LFISARHHLKELLKLSPLKNMCS 490

  Fly   495 ------------LPGMIIEPLIFVI-----------ICYWLTGLRSTFYAFGVTAMCVVLVMNVA 536
                        ||.::|..::|.:           ....||.|.|...:|.:......||:|..
 Worm   491 SLSIIIVSFVVELPFLLITSMVFAMPMSIFTDFHQKSSNHLTSLVSISSSFFINLSVTQLVVNSV 555

  Fly   537 TACGC------FFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFL---SWMLY 592
            :....      ||..::.|:..|..:..|:..|....:.:|....|:      .:||   |..||
 Worm   556 SNLSSEPLSFFFFVISWFSLFFACGFPFPIHSILKYFNPLFFPTTSV------FRFLYEDSPSLY 614

  Fly   593 ANEAMTAAQWSGVQNITC---FQESADL---PCFHTGQ-DVLDKYSFNES-----NVYRNLL--- 642
            ...::..:  :.:|..:|   |..:..:   ||..... ::|..|.||||     :::..:|   
 Worm   615 PQLSVNLS--TPIQLYSCGRTFLNTTQVTRGPCQKVSSFELLSYYGFNESFDKQKSIFHGILISN 677

  Fly   643 -AMVGLYFGFHLLGYYCL 659
             ....|:|...:|...|:
 Worm   678 FIFNYLFFSILILFVSCV 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 50/226 (22%)
3a01204 67..665 CDD:273361 132/668 (20%)
ABC2_membrane 395..600 CDD:279410 47/261 (18%)
abcx-1NP_495321.3 P-loop_NTPase 102..302 CDD:304359 49/220 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

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