DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and wht-2

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_502164.1 Gene:wht-2 / 178069 WormBaseID:WBGene00007513 Length:610 Species:Caenorhabditis elegans


Alignment Length:601 Identity:216/601 - (35%)
Similarity:321/601 - (53%) Gaps:28/601 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    68 TLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQ 132
            ||.|.::.::....|     |:|:.|.:|..:||.|:||||:||:|||||::.|..|...|....
 Worm    33 TLTWHNISIHAEKSG-----KQILENVSGIAKPGQLLALMGASGAGKTTLLNMLLSRNLRGLETS 92

  Fly   133 GDILINGRRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERT 197
            |.:.:||..:|..:..||||..||:||:|:|||.|:|:..|.||::.  ..|:||..:..::.:.
 Worm    93 GSVKVNGHELGRGITAISGYAQQDELFVGTLTVKEYLDIQAKLRVNG--DSEKRRRRVGNVMSQL 155

  Fly   198 GLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELA 262
            ||.....||||:...:|.:||||.:||.||.|||:||.|||||||||||||:.|:.:|..|..||
 Worm   156 GLYKCQNTRIGTIGGQKGISGGEMRRLTFACELLSNPSILFCDEPTTGLDSFMAESVVQVLSNLA 220

  Fly   263 QKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGV 327
            :.|.|::||||||||||:..|:.||.:|.|:.||.|||:.|:.||.:.|:.||..:||||.:|..
 Worm   221 KSGRTVICTIHQPSSQLYLMFDRVMFMAGGKTAFLGSPRDAIQFFEDAGFACPRNFNPADLIIHT 285

  Fly   328 LATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMAQSGNFPFDTEVESFRGVAWYKRF 392
            ||..|..|...::..:.:..:|..||..:    .:...:..:..|..|.:......     ..:.
 Worm   286 LAVMPNEEDKCRQRIEVIYTKFQNSSYGR----TLKFGVEKSDEGQRPSERHKTGI-----LTQI 341

  Fly   393 HVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHP 457
            ..:..|:::...|:|::...:.|||..|...||..:..:...| :|:..:.||||.::.|.||..
 Worm   342 GALLERSAIDTWRNPSLTRAKVIQKSIMGLFIGLLYLQSPLTS-IGISNLNGALFYLVCELTYST 405

  Fly   458 MYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAF 522
            ::.:||..|..|||..||...||||...||.|..|:.||....:.||.:::.||:.|..|:....
 Worm   406 IFGILNFLPADFPLVSREYHDGLYSVFSYYVARCLSYLPLFTADGLIMLLVSYWMVGFSSSITQV 470

  Fly   523 GVTAMCVVLVMNVATACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFL 587
            ....:...|:...::|||...|....|:|:||:...|:..:..:|.|::..|.:||....|.|:|
 Worm   471 LYACLIAFLIEQSSSACGIMISCISPSLPIAMSTAGPMLTLLSLTGGLYANVGALPSYISWIQYL 535

  Fly   588 SWMLYANEAMTAAQWSGV--QNITCF-QESADLPCFHTGQDVLDKYSFNESNVYRNLLAMVGLYF 649
            ||..|..||....|||.|  ||.|.: .|..|        .||.:.||.....|.:|..|.....
 Worm   536 SWFRYGFEAFAINQWSSVNEQNTTIWTDEKRD--------SVLSQLSFRAEMFYPDLFIMSAFIL 592

  Fly   650 GFHLLGYYCLWRRARK 665
            .|:.:||..|..|..|
 Worm   593 IFYTIGYAGLALRVSK 608

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 106/229 (46%)
3a01204 67..665 CDD:273361 215/599 (36%)
ABC2_membrane 395..600 CDD:279410 65/204 (32%)
wht-2NP_502164.1 3a01204 44..610 CDD:273361 213/590 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H104214
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3467
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
76.770

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