DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and abch-1

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_495320.1 Gene:abch-1 / 174078 WormBaseID:WBGene00016973 Length:595 Species:Caenorhabditis elegans


Alignment Length:598 Identity:137/598 - (22%)
Similarity:231/598 - (38%) Gaps:91/598 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    89 RIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDI---------LINGRRIGP 144
            :|:.|.:.....|.:.|::|.:.||||||:..|.  ..||    |||         ::..||...
 Worm    35 QILKNISFTATSGEIHAIVGVADSGKTTLLEALT--SGAG----GDIGGIAMLDKFMLTRRRFNK 93

  Fly   145 FMHRISGYVYQDDLFLGSLTVLEHLNFMAH---------LRLDRRVSKEERRLIIKELLERTGLL 200
            |...|:   |::. :..||:|...|.:.|.         |.:|.|:|:                |
 Worm    94 FCSHIN---YRNQ-YPSSLSVRSLLYYHARLCLSSTHTSLEIDHRISE----------------L 138

  Fly   201 SAAQTRIGSGDDK-KVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQK 264
            ||....||...|| :.||...|:|:...:|||.:|::...|:||..|...||.||:..|:..|.|
 Worm   139 SAMFDVIGYAHDKLEDLSFSARRRVMTVMELLKDPILTIIDDPTAYLSPLSAYQLIYALHFYAAK 203

  Fly   265 -GTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEAYNPADFLIGVL 328
             ...|:.|:....|.|.....:...|..|.||::|..:...:.|...|:.||...|||.:.:.:|
 Worm   204 FNRIIIITLRNVRSDLSHLLGSATCLFYGEVAYSGQMRLLPNHFKKAGFECPPNENPAAYYLSLL 268

  Fly   329 ATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEIHMAQSGNFPFDTEV--ESFRGVAWYKR 391
            ..|   :::.|:..:  ..:.|....|.:.|...:.:|    ||:....|.|  :|.|.......
 Worm   269 TID---KESMQKVME--TQEKATKLVAFRTDNDTSSDI----SGSSATGTGVLLDSGRKNPSIST 324

  Fly   392 FHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYH 456
            ...:..|..|:|:.......|..:....:...:.:....|:.||.|....:...|::::......
 Worm   325 VAAILFRRVLSLIGSTPSNSLAGLIAFPVTAAVLSFLRPTSLPSSLFFWKLLTFLYLLLQTIVIF 389

  Fly   457 PMYSVLNLFPQGFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYA 521
            |.||..:|      |..||  ..||..........:..|....|:..:||.|..|.....:.|..
 Worm   390 PNYSKTSL------LSFRE--CNLYCQTTSLTIFSIFFLVYSCIQSSLFVGIVLWSFKSEAMFQI 446

  Fly   522 FGVTAMCVVLVMNVATACGCFFSTAFNSVPL----AMAYLVPLDYIFMITSGIFIQVNSLPVAFW 582
            .....:..:...::.|.|..:.....|.|.|    .:|:.|..:.:...|:...||        :
 Worm   447 SLNLFLLSIFSFSIFTICARYLKNCSNIVILQTIIILAFFVSGNGVTGTTTSSSIQ--------Y 503

  Fly   583 WTQFLSWMLYANEAMTAAQWSGVQNITCFQESADLPCFHTGQDVLDKYSFN-ESNVYRNLLAMVG 646
            :...::...|:|..::....|.:.|..|           |....:.|.|.| .|::|....|...
 Worm   504 YIGVINPFNYSNFLLSKLLSSSIDNEEC-----------TFPSYMCKLSMNLHSDLYPPWYAPND 557

  Fly   647 LYFGFHLLGYYCL 659
            ::..|.:|  :||
 Worm   558 VFTNFAIL--FCL 568

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 65/228 (29%)
3a01204 67..665 CDD:273361 137/598 (23%)
ABC2_membrane 395..600 CDD:279410 37/208 (18%)
abch-1NP_495320.1 P-loop_NTPase 18..238 CDD:393306 65/228 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3467
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.860

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