DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and wht-4

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_494495.3 Gene:wht-4 / 173671 WormBaseID:WBGene00017179 Length:636 Species:Caenorhabditis elegans


Alignment Length:656 Identity:199/656 - (30%)
Similarity:333/656 - (50%) Gaps:50/656 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 LDSTPKLSKRNSSERSLPLRSYSKWSPTEQG-ATLVWRDLCVYTNVGGSGQRMKRIINNSTGAIQ 99
            :.|....|.|:::.:|..: :......:|:| .|:.|..|.......|.|:  |.:|.|.:|..:
 Worm     1 MQSLTTASMRDATSKSTMI-TVDTGDGSEKGRKTIAWSGLVATVPQAGGGR--KEVIRNVSGVAE 62

  Fly   100 PGTLMALMGSSGSGKTTLMSTLAFRQPAGTVVQGDILINGRRI-GPFMHRISGYVYQDDLFLGSL 163
            ||.::||||.||:||||||:.||.....|....||:.:||::| ...|.::..||.|.|||.|:|
 Worm    63 PGEVLALMGGSGAGKTTLMNILAHLDTNGVEYLGDVTVNGKKITKQKMRQMCAYVQQVDLFCGTL 127

  Fly   164 TVLEHLNFMAHLRLDRRVSKEERRLIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAV 228
            ||.|.|.:.||:|: :..:.:::...::.:|....|.....|.||..:..|.:|.||:||||||.
 Worm   128 TVREQLTYTAHMRM-KNATVQQKMERVENVLRDMNLTDCQNTLIGIPNRMKGISIGEKKRLAFAC 191

  Fly   229 ELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGR 293
            |:|.:|.||||||||:|||::.|.::|..|.:||.||.||:..:|||||.:|..|:.|..:|.|:
 Worm   192 EILTDPKILFCDEPTSGLDAFMASEVVRALLDLANKGKTIIVVLHQPSSTVFRMFHKVCFMATGK 256

  Fly   294 VAFTGSPQHALSFFANHG--YYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAK 356
            ..:.|:......||...|  :..||:||||||::..::..|..||......::|..::..|....
 Worm   257 TVYHGAVDRLCPFFDKLGPDFRVPESYNPADFVMSEISISPETEQEDVTRIEYLIHEYQNSDIGT 321

  Fly   357 QRDMLVNLEIHMAQSGNFPFD-TEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAM 420
            |  ||......:.:.|.:..| .:.||.....:..:|.::..|:..|..|||.:..:||.|.:|.
 Worm   322 Q--MLKKTRTAVDEFGGYGDDEDDGESRYNSTFGTQFEILLKRSLRTTFRDPLLLRVRFAQILAT 384

  Fly   421 AFIIGAC-----FAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGL 480
            |.::|..     ..|.|      :|.::|.::....:.|:...:..:|:.....|:|:||.:|.:
 Worm   385 AILVGIVNWRVELKGPT------IQNLEGVMYNCARDMTFLFYFPSVNVITSELPVFLREHKSNI 443

  Fly   481 YSTGQYYAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGV-TAMCVVL---VMNVATACGC 541
            ||...|:.|..||.||...|.|:|:..|.||:.||.::..:|.| ..:|:.|   .:::|....|
 Worm   444 YSVEAYFLAKSLAELPQYTILPMIYGTIIYWMAGLVASVTSFLVFVFVCITLTWVAVSIAYVGAC 508

  Fly   542 FFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQ 606
            .|......|.....:::|:    ::..|.::..||:||.:.:..|:||..:..||:.|.||..:.
 Worm   509 IFGDEGLVVTFMPMFVLPM----LVFGGFYVNANSIPVYYQYVSFVSWFKHGFEALEANQWKEID 569

  Fly   607 NI-------------TCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYC 658
            .|             |.:..::|.|...|.:.:       ::.:|.|:|.:...:|.:.::|...
 Worm   570 KISGCDLINPLNATTTGYCPASDGPGILTRRGI-------DTPLYANVLILFMSFFVYRIIGLVA 627

  Fly   659 LWRRAR 664
            |..|.|
 Worm   628 LKIRVR 633

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 96/233 (41%)
3a01204 67..665 CDD:273361 193/624 (31%)
ABC2_membrane 395..600 CDD:279410 57/213 (27%)
wht-4NP_494495.3 3a01204 49..636 CDD:273361 189/607 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160156466
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0061
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1022017at2759
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR48041
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
87.850

Return to query results.
Submit another query.