DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and abcg4

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:XP_004916110.1 Gene:abcg4 / 101734071 XenbaseID:XB-GENE-22063023 Length:639 Species:Xenopus tropicalis


Alignment Length:634 Identity:191/634 - (30%)
Similarity:312/634 - (49%) Gaps:78/634 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 PTEQGATLVWRDLCVYTNVGGSGQR--MKRIINNSTGAIQPGTLMALMGSSGSGKTTLMSTLAFR 124
            |......:.::||......|...::  .|.::...:|......|:.:||.||:||:|||:.||..
 Frog    50 PKRSAVDIEFKDLSYSVREGPCWRKRGYKTLLKCLSGMFCSRELIGIMGPSGAGKSTLMNILAGY 114

  Fly   125 QPAGTVVQGDILING--RRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERR 187
            :.:|  :.|.||:||  |.:..| .::|.|:.|||:.|..|||.|.:....:|:|:.::  |.::
 Frog   115 RESG--MTGQILVNGKQRELRTF-RKMSCYIMQDDMLLPHLTVKEAMMVSTNLKLNEKM--EVKK 174

  Fly   188 LIIKELLERTGLLSAAQTRIGSGDDKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLDSYSAQ 252
            .::.|:|...|||..:.||      ...||||:|||||.|:||:|||.::|.||||:||||.|..
 Frog   175 KLVNEILTALGLLDCSGTR------TLFLSGGQRKRLAIALELVNNPPVMFFDEPTSGLDSASCF 233

  Fly   253 QLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSFFANHGYYCPEA 317
            |:|:.|..|||.|.||:|||||||::||:.||.:.:|:.|:..:.||..|.:.:....|.:||..
 Frog   234 QVVSLLNSLAQGGRTIICTIHQPSAKLFEMFNKLYILSQGQCIYRGSVTHLIPYLKGLGLHCPTY 298

  Fly   318 YNPADFLIGVLATDPG-YEQASQRSAQH-LC-------DQFAVSSAAKQRDMLVNLEIHMAQSGN 373
            :|||||:|.:.:.:.| ......|:.:. ||       .|..:.......|:.|::|.|...:.:
 Frog   299 HNPADFIIELASGEYGDLNPLLFRAVEDGLCPITRDKSQQTKLDQEHCPNDVSVHVESHTFATSS 363

  Fly   374 FPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLG 438
            .               .:|.:::.|..|::|||..:..|||:..:.:..:||..:.      .:|
 Frog   364 L---------------NQFCILFKRTFLSILRDTVLTHLRFMSHLCIGVLIGLLYL------HIG 407

  Fly   439 VQAVQGALFIMISENTYHPMYSVLNL-----------FPQGFPLFMRETRSGLYSTGQYYAANIL 492
            ..|.:      :..||....:|:|.|           ||....:|:||..:..||...||.|..:
 Frog   408 DDASK------VFNNTGFLFFSMLFLMFAALMPTVLTFPLEMSVFLREHLNYWYSLKAYYLAKTM 466

  Fly   493 ALLPGMIIEPLIFVIICYWLTGLR---STFYAFGVTAMCVVLVMNVATACGCFFSTAFNSVPLAM 554
            |.:|..|:.|:.:..|.||:|...   |.|..|...|....|   ||.:.|.....|.||:.:| 
 Frog   467 ADVPFQIVCPVAYCSIVYWMTSQPPEVSRFLLFSALATSTAL---VAQSLGLLIGVASNSLQVA- 527

  Fly   555 AYLVPLDYI-FMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQN--ITCFQESAD 616
            .::.|:..| .::.||.|:...::|....|..::|::.|..|.:..|.: |:..  :.|    .:
 Frog   528 TFVGPVTAIPVLLFSGFFVSFKTIPTYLQWCSYISYVRYGFEGVILAIY-GMDRAPLQC----RE 587

  Fly   617 LPC-FHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCLWRRAR 664
            ||| |...|.||.:....::.:|.:.|.:.|.:.|..||.|..|..|.:
 Frog   588 LPCTFQLPQQVLQELDVEDAKLYVDFLVLGGFFLGLRLLAYLVLRYRVK 636

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 92/235 (39%)
3a01204 67..665 CDD:273361 190/629 (30%)
ABC2_membrane 395..600 CDD:279410 57/219 (26%)
abcg4XP_004916110.1 3a01204 40..639 CDD:273361 191/634 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000053
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X52
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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