DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment st and abca10

DIOPT Version :9

Sequence 1:NP_524108.1 Gene:st / 39836 FlyBaseID:FBgn0003515 Length:666 Species:Drosophila melanogaster
Sequence 2:XP_031750511.1 Gene:abca10 / 100485734 XenbaseID:XB-GENE-6464279 Length:1610 Species:Xenopus tropicalis


Alignment Length:668 Identity:140/668 - (20%)
Similarity:237/668 - (35%) Gaps:195/668 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    98 IQPGTLMALMGSSGSGKTTLMSTLAFRQP---AGTVVQGDILINGRRIGPFMHRISGYVYQDDLF 159
            |..|.:.||:|.||:|||||::.|:...|   ....|....|.|.|.:|....|: |:..|.|:.
 Frog   503 IYEGQITALLGHSGAGKTTLLNILSGMCPTSGGSATVCNYKLSNMRHLGEIKKRV-GFCPQGDIK 566

  Fly   160 LGSLTVLEHLNFMAHLRLDRRVSKEERRLIIKELLERT-GLLSAAQTRIGSGDDKKVLSGGERKR 223
            ...|||.|:|...|.:          :.:..||:..:. .:||..|.......:...||||::::
 Frog   567 FDPLTVKENLTVFAMI----------KGIPSKEVAHKVQTVLSDLQMNDIENIEASKLSGGQKRK 621

  Fly   224 LAFAVELLNNPVILFCDEPTTGLDSYSAQQLVATLYELAQKGTTILCTIHQPSSQLFDNFNNVML 288
            |.|.:.:|.:|.:|..||||.|||..|...:...|.|......|:|      |:|..|..:   :
 Frog   622 LTFGIAILGDPQVLLLDEPTAGLDPCSRHNIWTILKESKADRVTLL------STQFMDEAD---I 677

  Fly   289 LADGRVAFTGSPQHAL--SFFANHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAV 351
            |||.:|..:......:  |.|....:             ||     ||....|.|..  ||...:
 Frog   678 LADRKVVISKGKLKCVGTSLFLKRKW-------------GV-----GYHLRMQVSPS--CDVELM 722

  Fly   352 SSAAKQR-----------------------DMLVNLEIHM------------------------- 368
            :|..||.                       |:..:|.:|:                         
 Frog   723 TSIIKQHIPSTKLTTQNEEELTYTLPFENMDVFPDLFLHLDGQVGNSIVNYGVSMTTLDDVFLKL 787

  Fly   369 -----AQSGNF--------------PFDTEVE------------SFRGVAWYKRFHVVWLRASLT 402
                 .:||::              .|.||:|            :..|...:::..:...|..|.
 Frog   788 EGEGEIESGDYDVFNPESRTNEDREDFSTEMEESLLQMSDSGNVTLSGWELWRQQVLAVARIRLL 852

  Fly   403 LLRDPTIQWLRFIQKIAMAFIIGACFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQ 467
            .||..|    :..:.|.:..::      .|.|          .:.|:|:.|..: .:....|.|.
 Frog   853 KLRHDT----KSFRSILLLLVV------ITLP----------PIIIIITSNIVN-TFDAWELTPH 896

  Fly   468 GFPLFMRETRSGLYSTGQYYAANILALLPGMIIEPLIFVI--------ICYWLTGLRSTFY--AF 522
               |:.:..|:.|   .:||...::....|..||..:..:        :........:..|  |.
 Frog   897 ---LYFQSPRNRL---NKYYTDLLICNNTGSSIEDFVGAVKEQNIEVQVVNGEYDTETVKYRGAI 955

  Fly   523 GVTAM----CVVLVMNVATACGCFFSTAFNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWW 583
            .|:.|    ...:|.|         ..||||:|:.:..:.......:..||.| :|.:.|:....
 Frog   956 EVSQMEKGYNFTIVAN---------PKAFNSLPVLLNIISNALLKILKVSGHF-RVWNHPITTDG 1010

  Fly   584 TQ--FLSWM------LYANE-----AMTAAQWSGVQNITCFQESADLP-CFHTGQDVLDKYSFNE 634
            |.  ||.:|      ::|:.     ||::.:.:.:......:.|...| .:..||.::|...:  
 Frog  1011 TDIIFLPYMSLIFFIIFASAFCPHIAMSSTEDNRINARNQLRISGLFPSAYWFGQALVDVILY-- 1073

  Fly   635 SNVYRNLLAMVGLYFGFH 652
               :..|..||.:||.|:
 Frog  1074 ---WILLFLMVAIYFAFN 1088

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
stNP_524108.1 ABCG_EPDR 66..298 CDD:213180 62/203 (31%)
3a01204 67..665 CDD:273361 140/668 (21%)
ABC2_membrane 395..600 CDD:279410 44/231 (19%)
abca10XP_031750511.1 rim_protein <107..1597 CDD:130324 140/668 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
11.000

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