DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG33158 and mEFTu1

DIOPT Version :9

Sequence 1:NP_788515.1 Gene:CG33158 / 39834 FlyBaseID:FBgn0053158 Length:1033 Species:Drosophila melanogaster
Sequence 2:NP_001163144.1 Gene:mEFTu1 / 44438 FlyBaseID:FBgn0024556 Length:489 Species:Drosophila melanogaster


Alignment Length:463 Identity:105/463 - (22%)
Similarity:176/463 - (38%) Gaps:127/463 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 NICILAHVDHGKTTLADSLVASNGIISQRMAGKLRY--LDNRSDEQERGITMKSSSISLYYQEAE 83
            |:..:.|||||||||..::  :..:..:::|...:|  :||..:|:.||||:..:.:.  ||...
  Fly    84 NVGTIGHVDHGKTTLTAAI--TKVLADKQLAESKKYNEIDNAPEEKARGITINVAHVE--YQTET 144

  Fly    84 EMAGNPDYLINLIDSPGHVDFSSEVSTAVRLCDGAIVVVDVVEGVGPQTRACL---RQIYEEQLK 145
            ...|:       .|.|||.|:...:.|.....||||:||...:|..||||..:   :||..:.: 
  Fly   145 RHYGH-------TDCPGHADYIKNMITGTAQMDGAILVVAATDGAMPQTREHMLLAKQIGIDHI- 201

  Fly   146 PVLVLNKLDRLILEKQMDPLDAYFHLCQVL-------EQVNAVLGSIFA-----SDILAKEDITK 198
             |:.:||:|... |:.:|.::  ..:.::|       :::..|.||...     |..:.||.|.|
  Fly   202 -VVFINKVDAAD-EEMVDLVE--MEIRELLTEMGYDGDKIPVVKGSALCALEDKSPEIGKEAILK 262

  Fly   199 KDNYESALEEVDD-----------------SELYFSPSSGNVIFCSAYDGWAFSVRDFAAMYAKR 246
                  .|:|||.                 ..:|..|..|.|:                   ..|
  Fly   263 ------LLQEVDSFIPTPVRELDKPFLLPVENVYSIPGRGTVV-------------------TGR 302

  Fly   247 LE--MSRKDLENVLWGDFYYNSKKKEALPGAQEKAKKPMFVQFVLE-----NIWSLYDIIAIRKD 304
            ||  :.:|.:|....|   ||...|..:.|.:      ||.|.:.|     .:.:|  :..:::|
  Fly   303 LERGVVKKGMECEFVG---YNKVLKSTVTGVE------MFHQILEEAQAGDQLGAL--VRGVKRD 356

  Fly   305 KDKLPGIAEKLGLKLATRDLRL------------TDP---KLQIKAVLGQWLPIDKSVLHMVIQ- 353
            ..|...:..|.|...|...|..            |.|   .:|::.....|        ...:| 
  Fly   357 DIKRGMVMCKPGSVKALDQLEAQVYILSKDEGGRTKPFMSFIQLQMFSRTW--------DCAVQV 413

  Fly   354 HVPPPHKISDERAQRLLYPANVDLSSLPPETLELKESFTSCDANSSNVIAFVSKMTPVHITHLPQ 418
            .:|....:......:|:      |..:.|..||..:.||..|.|.:.....|:...|    .|.:
  Fly   414 QIPDKEMVMPGEDTKLI------LRLIRPMVLEQGQRFTLRDGNLTLGTGVVTSTLP----PLTE 468

  Fly   419 NRPKRLTD 426
            ::...||:
  Fly   469 SQRSELTE 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG33158NP_788515.1 PTZ00416 15..1016 CDD:240409 105/463 (23%)
EF2 20..249 CDD:206672 67/263 (25%)
EF2_II 485..572 CDD:293913
EF2_snRNP_III 587..658 CDD:293918
aeEF2_snRNP_like_IV 658..899 CDD:238839
eEF2_snRNP_like_C 896..974 CDD:239763
mEFTu1NP_001163144.1 PRK00049 73..463 CDD:234596 101/444 (23%)
EF_Tu 81..274 CDD:206671 60/211 (28%)
EFTU_II 282..368 CDD:293898 22/115 (19%)
mtEFTU_III 371..462 CDD:294005 18/104 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45464547
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
21.840

Return to query results.
Submit another query.