DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GluRS-m and LOC103690821

DIOPT Version :9

Sequence 1:NP_648894.2 Gene:GluRS-m / 39828 FlyBaseID:FBgn0036629 Length:511 Species:Drosophila melanogaster
Sequence 2:XP_008771430.1 Gene:LOC103690821 / 103690821 RGDID:9350894 Length:51 Species:Rattus norvegicus


Alignment Length:45 Identity:11/45 - (24%)
Similarity:21/45 - (46%) Gaps:14/45 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   120 TAYRCFCTERRLDLLRKEALRTRQVP-----------RYDNKCRH 153
            ::::.|..:|   .|.|:..:.|.:|           ||::|.||
  Rat     2 SSHKTFRIKR---FLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRH 43

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GluRS-mNP_648894.2 gltX 19..500 CDD:234953 11/45 (24%)
GluRS_core 21..349 CDD:173905 11/45 (24%)
Ribosomal_L7_L12 <442..503 CDD:305167
LOC103690821XP_008771430.1 Ribosomal_L39 9..50 CDD:395670 10/38 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0008
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.