DRSC/TRiP Functional Genomics Resources

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Protein Alignment TMS1 and serinc1.1

DIOPT Version :9

Sequence 1:NP_001261947.1 Gene:TMS1 / 39827 FlyBaseID:FBgn0028399 Length:467 Species:Drosophila melanogaster
Sequence 2:NP_001011399.1 Gene:serinc1.1 / 496872 XenbaseID:XB-GENE-954990 Length:460 Species:Xenopus tropicalis


Alignment Length:438 Identity:196/438 - (44%)
Similarity:280/438 - (63%) Gaps:30/438 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGAALGICSAAQCAMCCGGTAASMCCSACPSCTNASSSRFMYAFILLVGTVLGAIALSPGLQDTL 65
            ||..||:|:||....|..|:|..:.|..|||..|::.:|.:|||.||:|..:..:.|.||:::.|
 Frog     1 MGGVLGLCTAASWIPCLCGSAPCLLCRCCPSGNNSTVTRLIYAFFLLIGVTVACVMLIPGMEEQL 65

  Fly    66 KKMP-FCINSTSSYSSGALSAVSGGSLQVDCEYALGYMAVYRVCFGMACFFALMSLIMLGVKSSR 129
            ||:| ||       ..|..|::.|.|..|:|:..:||.||||||||||.||.|.||:|:.||||:
 Frog    66 KKIPGFC-------DGGMGSSIPGISGHVNCDVLVGYKAVYRVCFGMAMFFLLFSLLMIKVKSSQ 123

  Fly   130 DPRSHIQNNFWPLKFLICFGAAIGAIFIPDGSFGPAMMWVGLIGGLAFILVQLVIIVDFAHSLAE 194
            |||:.:.|.||..||....|..:||.|||:|.|.....:||:.|...|||:|||:::|||||..|
 Frog   124 DPRASVHNGFWFFKFAAAVGITVGAFFIPEGPFTTVWFYVGMGGAFCFILIQLVLLIDFAHSWNE 188

  Fly   195 NWIESAE--NSRGYYYALAGVTLLCYILSLTGITLLYIYFTTSTGCGINKFFISINLIFCLAISV 257
            :|:|..|  |||.:|.||...|.:.|:|||..|.|.|:|:|...||..||.|||:|::.|:..|:
 Frog   189 SWVEKMEEGNSRCWYAALLSATGMNYVLSLVAIVLFYVYYTHPEGCAENKAFISVNMLLCIGASL 253

  Fly   258 ISILPAVQERLPHSGLLQSSLVTLYTVYLTWSAVANNPEKECNPGMFGMMEGFGNATTTAAPPTH 322
            :|:||.:||..|.|||||||::|:||:||||||:.|.|:::|||.:..:: |: |:|:|   |..
 Frog   254 MSVLPKIQESQPRSGLLQSSVITVYTMYLTWSAMTNEPDRKCNPSLLSII-GY-NSTST---PGQ 313

  Fly   323 TTRVT-FDTTNIIGLVVWLLCILYNCI--SSAVEVSKISHDNSEKREALSDTEAGTDGSGKPS-- 382
            ...|. :|...|:|||::|||:||:.|  |:..:|:|::..:.|  ..|.:....:|||.:.|  
 Frog   314 VKVVQWWDAQGIVGLVLFLLCVLYSSIRTSNNSQVNKLTLTSDE--STLIEDGGRSDGSMEDSDN 376

  Fly   383 ----TDTETEGVTYSWSMFHLVFVCASLYVMMTLTNWYNNFLFPQTSF 426
                .|.|.:|||||:|.||.:...||||:||||||||:    |.:|:
 Frog   377 AHRAVDNERDGVTYSYSFFHFMLFLASLYIMMTLTNWYS----PDSSY 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TMS1NP_001261947.1 Serinc 16..417 CDD:281358 186/412 (45%)
serinc1.1NP_001011399.1 Serinc 16..458 CDD:367456 189/423 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 358 1.000 Domainoid score I970
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H41334
Inparanoid 1 1.050 364 1.000 Inparanoid score I2117
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1276632at2759
OrthoFinder 1 1.000 - - FOG0000665
OrthoInspector 1 1.000 - - otm49081
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1919
SonicParanoid 1 1.000 - - X262
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.090

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