DRSC/TRiP Functional Genomics Resources

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Protein Alignment TMS1 and Serinc3

DIOPT Version :9

Sequence 1:NP_001261947.1 Gene:TMS1 / 39827 FlyBaseID:FBgn0028399 Length:467 Species:Drosophila melanogaster
Sequence 2:NP_036162.3 Gene:Serinc3 / 26943 MGIID:1349457 Length:472 Species:Mus musculus


Alignment Length:474 Identity:196/474 - (41%)
Similarity:278/474 - (58%) Gaps:37/474 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGAALGICSAAQCAMC-CGGTAASMCCSACPSCTNASSSRFMYAFILLVGTVLGAIALSPGLQDT 64
            |||.||:.|.|....| |.| |:.:.||.||...|::.:|.:|||||.:||::..|.::.|:|..
Mouse     1 MGAVLGVFSLASWVPCLCSG-ASCLLCSCCPISKNSTVTRLIYAFILFLGTIVSCIMMTEGIQTQ 64

  Fly    65 LKKMP-FCINSTSSYSSGALSAVSGGSLQVDCEYALGYMAVYRVCFGMACFFALMSLIMLGVKSS 128
            |||:| ||       ..|....:.....:.||:..:|:.||||:.|.:|.||....|:||.||:|
Mouse    65 LKKIPGFC-------EGGFQIKMVDTKAEKDCDVLVGFKAVYRINFAVAIFFFAFFLLMLKVKTS 122

  Fly   129 RDPRSHIQNNFWPLKFLICFGAAIGAIFIPDGSFGPAMMWVGLIGGLAFILVQLVIIVDFAHSLA 193
            :|||:.:.|.||..|.....|..||:.:||.|||.......|::|...||::|||::||.|||..
Mouse   123 KDPRAAVHNGFWFFKIAAIIGIMIGSFYIPGGSFTEVWFVAGMLGASFFIIIQLVLLVDMAHSWN 187

  Fly   194 ENWIESAE--NSRGYYYALAGVTLLCYILSLTGITLLYIYFTTSTGCGINKFFISINLIFCLAIS 256
            |.|:...|  |.|.:|.||...|.|.||||:....|||:::|....|..||.|||:|||||:|:|
Mouse   188 ELWVNRMEEGNPRLWYAALLSFTSLFYILSIVFAALLYVFYTKPDDCTENKVFISLNLIFCVAVS 252

  Fly   257 VISILPAVQERLPHSGLLQSSLVTLYTVYLTWSAVANNPEKECNPGMFGMMEGF-------GNAT 314
            ::||||.|||..|.|||||||::||||:||||||:.|.||:.|||.:..::...       .|:|
Mouse   253 IVSILPKVQEHQPRSGLLQSSIITLYTLYLTWSAMTNEPERSCNPSLMSIITHLTSPTVSPANST 317

  Fly   315 TTA---APPTHTTRVTFDTTNIIGLVVWLLCILYNCI--SSAVEVSKISHDNSEKREALSDTEAG 374
            |.|   |||:.:... .:..:|.||::::.|::|:..  ||..:|:|::...|:. ..|.||..|
Mouse   318 TLAPAYAPPSQSGHF-MNLDDIWGLIIFVFCLIYSSFRTSSNSQVNKLTLSGSDS-VILGDTTNG 380

  Fly   375 T----DGSGKPSTDTETEGVTYSWSMFHLVFVCASLYVMMTLTNWYN-NFLFPQTSFGNRAVQRQ 434
            .    ||..:.:.|.|.|||.||:|.|||:..|||||:|||:|:||: :..|.:.|....||   
Mouse   381 ANDEEDGQPRRAVDNEKEGVQYSYSFFHLMLCCASLYIMMTITSWYSPDAKFQKVSSKWLAV--- 442

  Fly   435 RGFHVGQDRLQLAGCLHLW 453
             .|.:|...|.|  .|:||
Mouse   443 -WFKMGSSWLCL--LLYLW 458

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TMS1NP_001261947.1 Serinc 16..417 CDD:281358 177/420 (42%)
Serinc3NP_036162.3 Serinc 16..470 CDD:397431 189/459 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167849125
Domainoid 1 1.000 337 1.000 Domainoid score I1110
eggNOG 1 0.900 - - E1_KOG2592
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 351 1.000 Inparanoid score I2254
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53917
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000665
OrthoInspector 1 1.000 - - otm43909
orthoMCL 1 0.900 - - OOG6_101085
Panther 1 1.100 - - O PTHR10383
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1919
SonicParanoid 1 1.000 - - X262
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.790

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