DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TMS1 and SPAPB1A10.07c

DIOPT Version :9

Sequence 1:NP_001261947.1 Gene:TMS1 / 39827 FlyBaseID:FBgn0028399 Length:467 Species:Drosophila melanogaster
Sequence 2:NP_593521.1 Gene:SPAPB1A10.07c / 2543369 PomBaseID:SPAPB1A10.07c Length:441 Species:Schizosaccharomyces pombe


Alignment Length:469 Identity:141/469 - (30%)
Similarity:221/469 - (47%) Gaps:96/469 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGAALGICSAAQCAMC-CGGTAASMCCSACPSCTNASSSR----FMYAFILLVGTVLGAIALSPG 60
            |||.|.|..|...::. ..|.|:|...::..|.||:..|.    ..||.:..|.::|.       
pombe     1 MGAVLSIPLALASSLSGVVGIASSFLVTSVLSLTNSIQSNVGAVISYAVLYFVNSLLS------- 58

  Fly    61 LQDTLKKMPFCINSTSSYSSGALSAVSGGSLQVDCE-----YALGYMAVYRVCFGMACFFALMSL 120
                     :|:  .||:.:..||.:|.|.||.||:     |::  :||:|:.|.:..|...::.
pombe    59 ---------WCM--LSSWFNSKLSKLSAGYLQFDCQNDGKCYSV--IAVHRLSFTLVMFHLFLAF 110

  Fly   121 IMLGVKSSRDPRSH----IQNNFWPLKFLICFGAAIGAIFIPDG--SFGPAMMW---VGLIGGLA 176
            |:    |..:.||.    |||..||.|.::.|...|.:.|||..  ||     |   :.::|...
pombe   111 IL----SLCNTRSRVAIKIQNGLWPFKIVLWFVLGIFSFFIPTKFLSF-----WGNIISVMGSAL 166

  Fly   177 FILVQLVIIVDFAHSLAENWIE---SAENSRGYYYALAGVTLLCYILSLTGITLLYIYFTTSTGC 238
            ||:..|:::|||||:.||..::   ::::|...:| |.|.|:..|::.|....|.|::|..|: |
pombe   167 FIVYGLMLLVDFAHTWAERCVDRVLTSDSSSSKFY-LIGSTVGMYVVGLVLTILTYVFFCASS-C 229

  Fly   239 GINKFFISINLIFCLAISVISILPAVQERLPHSGLLQSSLVTLYTVYLTWSAVANNP-EKECNPG 302
            ..|:...:|||:.|:|:|.:|:.|.:||..|.|||.|||:|..||.||..||:||.| |.:||| 
pombe   230 SFNQAINTINLLLCIAVSCLSVHPTIQEYNPRSGLAQSSMVMCYTCYLILSALANRPDEGQCNP- 293

  Fly   303 MFGMMEGFGNATTTAAPPTHTTRVTFDTTNIIGLVVWLLCILYNCISSAVEVSKISHD------- 360
                   :||:.:.          |.:.:.:||.......|||:.:.:|  .|:.|.|       
pombe   294 -------WGNSASG----------TREFSKVIGAAFTFFTILYSAVRAA--SSRESDDSYSYLYA 339

  Fly   361 NSEKREALSDTEAGTDGSGKPSTDTETEGVTYSWSMFHLVFVCASLYVMMTLTNW--------YN 417
            :|......:..|.|:....|..:|       |::..||:|||.|:.|....||||        ..
pombe   340 DSHDMGVSTPLEDGSSEEDKHQSD-------YNFIWFHIVFVLAAFYTASLLTNWNTTSVYENQK 397

  Fly   418 NFLFPQTSFGNRAV 431
            |.:|.:..|...||
pombe   398 NDVFVRIGFSYAAV 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TMS1NP_001261947.1 Serinc 16..417 CDD:281358 130/438 (30%)
SPAPB1A10.07cNP_593521.1 Serinc 36..439 CDD:281358 129/434 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 158 1.000 Domainoid score I1013
eggNOG 1 0.900 - - E1_KOG2592
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41334
Inparanoid 1 1.050 161 1.000 Inparanoid score I1239
OMA 1 1.010 - - QHG53917
OrthoFinder 1 1.000 - - FOG0000665
OrthoInspector 1 1.000 - - oto101773
orthoMCL 1 0.900 - - OOG6_101085
Panther 1 1.100 - - LDO PTHR10383
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1919
SonicParanoid 1 1.000 - - X262
TreeFam 1 0.960 - -
1413.860

Return to query results.
Submit another query.