DRSC/TRiP Functional Genomics Resources

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Protein Alignment TMS1 and R11H6.2

DIOPT Version :9

Sequence 1:NP_001261947.1 Gene:TMS1 / 39827 FlyBaseID:FBgn0028399 Length:467 Species:Drosophila melanogaster
Sequence 2:NP_506611.1 Gene:R11H6.2 / 179964 WormBaseID:WBGene00011250 Length:442 Species:Caenorhabditis elegans


Alignment Length:428 Identity:176/428 - (41%)
Similarity:250/428 - (58%) Gaps:41/428 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGAALGICSAAQCAMCC-GGTAASMCCSACPSCTNASSSRFMYAFILLVGTVLGAIALSPGLQDT 64
            |||.|.....|..|.|| |.:|.|:||||||...|::::|.|||.:|:..|.:..:.|.||:|..
 Worm     1 MGALLAAPFCAASAACCFGSSACSLCCSACPGAKNSTTTRIMYALMLISATFMAVVMLLPGVQKK 65

  Fly    65 LKKMPFCINSTSSYSSGALSAVSGGSLQVDCEYALGYMAVYRVCFGMACFFALMSLIMLGVKSSR 129
            |.:..:..:..:.|:.            |:||:|:||.||||||.|.|.||.|..|:|.||.||:
 Worm    66 LVENKWLCDGLNEYAG------------VNCEHAIGYQAVYRVCAGAASFFFLFMLLMFGVSSSK 118

  Fly   130 DPRSHIQNNFWPLKFLICFGAAIGAIFIPDGSFGPAMMWVGLIGGLAFILVQLVIIVDFAHSLAE 194
            |.||.|||.||..|:|:.||...|..||...:....:|::|::|...|||:||::||||||.|||
 Worm   119 DGRSSIQNGFWFFKYLLMFGIIGGFFFIGSETLATPLMYIGMLGAFLFILIQLILIVDFAHGLAE 183

  Fly   195 NWIESAENSRGYYYALAGVTLLCYILSLTGITLLYIYFTTSTGCGINKFFISINLIFCLAISVIS 259
            :..|. .:||..|..|...|...:::.|.....::|.:....|||:.|||:..|::.|:|||::|
 Worm   184 SQYED-NDSRACYAGLLITTFGGFLVCLIAAVYVFINYAIGDGCGLPKFFVIFNVLICVAISLLS 247

  Fly   260 ILPAVQERLPHSGLLQSSLVTLYTVYLTWSAVANNPEKECNPGMFGMMEGFGNATTTAAPPTHTT 324
            :.|.|||..|.|||||..:::.|.:||||||:.:||.:.|||.:       .|.|.:|.|   |.
 Worm   248 VSPMVQEVNPRSGLLQPVVISAYIIYLTWSALLSNPNESCNPTL-------ANVTQSAIP---TG 302

  Fly   325 RVTFDTT--------NIIGLVVWLLCILYNCI--SSAVEVSKISHDNSEKREALSDTEAGTDGSG 379
            .||.|.:        ::|.|::||:|::|..|  ||...:.||:.|| |:...|:|.|.|     
 Worm   303 GVTKDDSFVTPLPVHSLISLLIWLICLVYASIRNSSNTSLGKITGDN-EEHVQLNDVEGG----- 361

  Fly   380 KPSTDTETEGVTYSWSMFHLVFVCASLYVMMTLTNWYN 417
             .:.|.|.|||.||:|.||.:|..||||||||||:||:
 Worm   362 -KAWDNEEEGVAYSYSFFHFMFCLASLYVMMTLTSWYH 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TMS1NP_001261947.1 Serinc 16..417 CDD:281358 169/411 (41%)
R11H6.2NP_506611.1 Serinc 19..441 CDD:281358 168/410 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166281
Domainoid 1 1.000 319 1.000 Domainoid score I668
eggNOG 1 0.900 - - E1_KOG2592
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41334
Inparanoid 1 1.050 326 1.000 Inparanoid score I1462
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53917
OrthoDB 1 1.010 - - D1276632at2759
OrthoFinder 1 1.000 - - FOG0000665
OrthoInspector 1 1.000 - - otm14280
orthoMCL 1 0.900 - - OOG6_101085
Panther 1 1.100 - - O PTHR10383
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1919
SonicParanoid 1 1.000 - - X262
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.840

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