DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TMS1 and Y57E12AL.1

DIOPT Version :9

Sequence 1:NP_001261947.1 Gene:TMS1 / 39827 FlyBaseID:FBgn0028399 Length:467 Species:Drosophila melanogaster
Sequence 2:NP_741561.1 Gene:Y57E12AL.1 / 179093 WormBaseID:WBGene00021956 Length:459 Species:Caenorhabditis elegans


Alignment Length:432 Identity:179/432 - (41%)
Similarity:253/432 - (58%) Gaps:34/432 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MGAALGICSAAQCAMCCGGTAA-SMCCSACPSCTNASSSRFMYAFILLVGTVLGAIALSPGLQDT 64
            |||.|...:.|..:.||.|:|| |:|||.||:..:::::|.||||:|...|.|..|.|.||:|:.
 Worm     1 MGALLAAPACAASSACCFGSAACSLCCSICPTTKSSTTTRIMYAFLLFTSTFLSCIMLLPGIQNK 65

  Fly    65 LKKMPFCINSTSSYSSGALSAVSGGSLQVDCEYALGYMAVYRVCFGMACFFALMSLIMLGVKSSR 129
            |.:..:.....:.|:.            :.|.:|.|:.||||||...|.|:.|..|||:|||.|:
 Worm    66 LAENKWFCEGLNEYAG------------ISCAHATGFQAVYRVCAATASFYLLFMLIMIGVKDSK 118

  Fly   130 DPRSHIQNNFWPLKFLICFGAAIGAIFIPDGSFGPAMMWVGLIGGLAFILVQLVIIVDFAHSLAE 194
            |.||.|||.||..|:||.....:|..||...|....:|::|||||..|||:||::||||||.|||
 Worm   119 DGRSSIQNGFWFFKYLILGALIVGFFFIRSESLATPLMYIGLIGGFMFILIQLILIVDFAHGLAE 183

  Fly   195 NWIESAENSR-GYYYALAGVTLL-CYILSLTGITLLYIYFTTSTGCGINKFFISINLIFCLAISV 257
            .|:.|.|.|. .|.||...||:. .:.|:||.:.::|||:.:..|||:.:||:..|.:.|:.::.
 Worm   184 AWVTSYEESESNYCYAGLLVTVFGGFALALTAVIIMYIYYASGEGCGLPRFFVIFNTLLCVGLTA 248

  Fly   258 ISILPAVQERLPHSGLLQSSLVTLYTVYLTWSAVANNPEKECNPGMFGMMEGFGNATTTAAPPTH 322
            :|:.|||||..|.|||:|:.::|.|.:||||:|:.|||:|.|||.:..:..  ||:|    .|:|
 Worm   249 LSLAPAVQEVSPRSGLVQAVMITGYVMYLTWAALINNPDKACNPSLISIFT--GNST----DPSH 307

  Fly   323 TT-----RVTFDTTNIIGLVVWLLCILYNCI--SSAVEVSKISHDNSEKREA--LSDTEAGTDG- 377
            .|     .:.....:|:.|.:|..|:||..|  ||...:.||:...:...||  ||.:..|.|. 
 Worm   308 KTDEGHYGIPLPAQSIVSLFLWFACLLYASIRNSSNTSLGKITGGGNTSDEAIQLSSSLNGADDA 372

  Fly   378 ---SGKPSTDTETEGVTYSWSMFHLVFVCASLYVMMTLTNWY 416
               :.|...|.|.|||.||:|.||.:|..||||||||||:||
 Worm   373 ESQNSKRVYDNEEEGVAYSYSFFHFMFALASLYVMMTLTSWY 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TMS1NP_001261947.1 Serinc 16..417 CDD:281358 174/417 (42%)
Y57E12AL.1NP_741561.1 Serinc 18..458 CDD:281358 172/415 (41%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160166282
Domainoid 1 1.000 319 1.000 Domainoid score I668
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H41334
Inparanoid 1 1.050 326 1.000 Inparanoid score I1462
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53917
OrthoDB 1 1.010 - - D1276632at2759
OrthoFinder 1 1.000 - - FOG0000665
OrthoInspector 1 1.000 - - otm14280
orthoMCL 1 0.900 - - OOG6_101085
Panther 1 1.100 - - LDO PTHR10383
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1919
SonicParanoid 1 1.000 - - X262
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1413.940

Return to query results.
Submit another query.