DRSC/TRiP Functional Genomics Resources

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Protein Alignment TMS1 and serinc4

DIOPT Version :9

Sequence 1:NP_001261947.1 Gene:TMS1 / 39827 FlyBaseID:FBgn0028399 Length:467 Species:Drosophila melanogaster
Sequence 2:XP_002932305.2 Gene:serinc4 / 100492591 XenbaseID:XB-GENE-6065301 Length:508 Species:Xenopus tropicalis


Alignment Length:475 Identity:154/475 - (32%)
Similarity:237/475 - (49%) Gaps:60/475 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 QCAMCCGGTAASMCCSACPSCTNASSSRFMYAFILLVGTVLGAIALSPGLQDTLKKMPFCINSTS 76
            |...|||.:..|.||:.|||...::.:|.:|....::.:.:..:.||       ||.........
 Frog    29 QICCCCGPSPCSFCCACCPSIKVSTGTRLLYTLFHILASTVCCLMLS-------KKASEAFQENL 86

  Fly    77 SYSSGALSAVSGGSLQVDCEYALGYMAVYRVCFGMACFFALMSLIMLGVKSSRDPRSHIQNNFWP 141
            .:.|.....:.||.   ||:..:||.||||||||...|:.|.|:.:|.|||:::.|:.|.|.||.
 Frog    87 PWFSSICKQLPGGK---DCDMLVGYSAVYRVCFGTVSFYFLHSVFLLNVKSTQEFRAMIHNGFWF 148

  Fly   142 LKFLICFGAAIGAIFIPDGSFGPAMMWVGLIGGLAFILVQLVIIVDFAHSLAENWIESAENSRGY 206
            ||.:|..|..:.|.|||...|.....:||:.||.:|:|:||::|..|||:..:||:..|...:.:
 Frog   149 LKLVILVGMCVAAFFIPSDYFIKVWHYVGVCGGFSFVLMQLILITAFAHTWNKNWLTGASKDKRW 213

  Fly   207 YYALAGVTLLCYILSLTGITLLYIYFTTSTGCGINKFFISINLIFCLAISVISILPAVQERLPHS 271
            |.|:...|||.|.::......||.:||...||.:||..|.||::.|:.:|.||:.|.||.:.|.|
 Frog   214 YLAVVLATLLFYSIASAAFYFLYKFFTHPAGCMLNKGLIGINIVLCIIMSFISVTPCVQIKQPRS 278

  Fly   272 GLLQSSLVTLYTVYLTWSAVANNPEKECNPGMFGMMEGFGNATTTAAPPTHTTRVTFDTTN--II 334
            ||||:|:::.|..|||:||:::.|.:.        ::..|:..|...|......:..:..:  ||
 Frog   279 GLLQASIISCYVTYLTFSALSSRPPER--------VQYKGDNLTICFPSISRDGLQTEDASIAII 335

  Fly   335 GLVVWLLCILYNCISSA----------------VEVSKIS-----HDNSEKREALSDTEAGTDGS 378
            |..:...|:|:.|..::                .|..|.|     .:..|:.....::|...|.|
 Frog   336 GAAIMYACVLFACNEASYLAEMFGPMWMIKVYTYEFQKASCCFCCPEEEEEEGGGQNSEENKDNS 400

  Fly   379 GKPST-DTETEGVTYSWSMFHLVFVCASLYVMMTLTNWYNNFLFPQTSFGNRAVQRQRGFHVGQ- 441
            |..:. ..|:|.|.||:|.||.|||.||||||||||||:        |:.|..::..  |..|. 
 Frog   401 GGQTVIHDESERVVYSYSFFHFVFVLASLYVMMTLTNWF--------SYENSTLETI--FTHGSW 455

  Fly   442 --DRLQLAGC-----LHLWL 454
              ..:::|.|     |:||:
 Frog   456 PTFWIKVASCWTCVILYLWI 475

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TMS1NP_001261947.1 Serinc 16..417 CDD:281358 144/424 (34%)
serinc4XP_002932305.2 Serinc 42..482 CDD:281358 149/462 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53917
OrthoDB 1 1.010 - - D1276632at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10383
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X262
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
55.030

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