DRSC/TRiP Functional Genomics Resources

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Protein Alignment RAF2 and zmynd10

DIOPT Version :9

Sequence 1:NP_001261943.1 Gene:RAF2 / 39821 FlyBaseID:FBgn0036624 Length:1117 Species:Drosophila melanogaster
Sequence 2:NP_956691.1 Gene:zmynd10 / 393368 ZFINID:ZDB-GENE-040426-1218 Length:448 Species:Danio rerio


Alignment Length:496 Identity:100/496 - (20%)
Similarity:162/496 - (32%) Gaps:185/496 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   719 LGSPAASSSTTRQKSFVD-LN-----NSDANFHYRVKELFDELNS-------------------T 758
            :|||    ...||..|:: ||     |:.||....:|:||..|..                   .
Zfish    25 IGSP----RWFRQHEFIEKLNMQAVLNASANQEEFIKDLFVSLGKIPTLVHAMILTEVWKHKVFP 85

  Fly   759 MIDKINSVPPDEDSLKK---ERERIVADLAALDKLMAQKE-------------DEYNRLLYLSCI 807
            :|.|:....|....|..   ..|..:.:|  |:.:|..||             |..:|.|.| .:
Zfish    86 IICKLQDFNPKSTFLLYMVIHHEATIINL--LETIMYHKESSEAAGDCVLDLVDYCHRKLTL-LV 147

  Fly   808 KKELHERMERKERLIRIKDLLPILINKCGTKELSEVKAMLEEEIDSPMAS------KH----SLS 862
            .:.:...:..::|:...:     :......::|.:...|||.||.....|      .|    |||
Zfish   148 GRSVSGEIPTQDRITHTQ-----ISGTASVQDLQKQSDMLEFEISIKALSVLCYITDHVESLSLS 207

  Fly   863 AIEKLLNYAELNQNIIQLLRG---SLGLNKRAP-----SVSPANFEDDQMLFRRDS---LPVSHL 916
            .:.::|....:...::||:..   ..|..::..     :|.|   ||...|.:.|.   :.:.:|
Zfish   208 VLSRMLCTHNMPCVLVQLVENCPWKRGTQEKYTEGKWRAVLP---EDQLKLSKHDGQVWIALLNL 269

  Fly   917 --------------SMRDQHYESRNAVNDHLLDSNPD-------------RDPPAKRPKLIHSQD 954
                          |.:.|..:.|..:.|.::|..|:             .||.|.:..||..| 
Zfish   270 MLKPDCQRKYDFNSSNKTQLLKLRGFLTDVVIDQLPNLLDLKHFLSQLALTDPVAPKKDLILEQ- 333

  Fly   955 SNQDMASSSTHLSANLSETLRKI-----RAWKNYSHFSNVSMEDNNSDNESQIEPLFNSSPMASR 1014
                           |.|....|     :.||..:.:              |:..:||.|....|
Zfish   334 ---------------LPEIWNNIVMENDKKWKAIAKY--------------QVTNVFNPSESELR 369

  Fly  1015 RQLANR--QSYQEQHSANINDHEN-VQKRHKSHKRKSHKHKSHKHRSSHKSQAESSATINGNTGR 1076
            .| |:|  |:|      |::..|| :..:.|                                  
Zfish   370 EQ-ASRLAQTY------NLDVMENLIPDKPK---------------------------------- 393

  Fly  1077 QCHECKLYGATFMCSNCQNQWYCSRECQLSDWDTHHRTCGI 1117
             |..|...|.. .||.||.:|||:||||:..|..|..:|.:
Zfish   394 -CGACGRTGVK-RCSRCQGEWYCNRECQVKHWPKHKLSCNL 432

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RAF2NP_001261943.1 zf-MYND 1078..1115 CDD:280009 16/36 (44%)
zmynd10NP_956691.1 zf-MYND 394..430 CDD:280009 16/36 (44%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005808
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.000

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