DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Agpat4 and Lclat1

DIOPT Version :9

Sequence 1:NP_001261942.1 Gene:Agpat4 / 39819 FlyBaseID:FBgn0036622 Length:380 Species:Drosophila melanogaster
Sequence 2:XP_036016461.1 Gene:Lclat1 / 225010 MGIID:2684937 Length:492 Species:Mus musculus


Alignment Length:374 Identity:96/374 - (25%)
Similarity:172/374 - (45%) Gaps:36/374 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LIAVTFFTCGFFVNIGQLLLILLVRPFDKKLSRSLAYY------LHYSFYCILVCVAEWYAGSKL 69
            |.|.:||  |....:|.:|.::.:         :|::|      |..::..:.|.:.|...|.::
Mouse   129 LFAGSFF--GSIFMLGPILPLMFI---------NLSWYRWISSRLVATWLTLPVALLETMFGVRV 182

  Fly    70 RVYIDPQDEQKFFGKEHGLLLMNHTYEIDWLTAWMITDKLGNLGGTKAYAKKMLRYVPVLGWVWW 134
            .:..|     .|...|..:::|||...:||:..|....:...|...|...|..|:.||..||...
Mouse   183 VITGD-----AFVPGERSVIIMNHRTRVDWMFLWNCLMRYSYLRVEKICLKSSLKSVPGFGWAMQ 242

  Fly   135 MAEFIFLDRNFEKDKVVIKTQLKEVFSYPDPVWLLLNAEGTRFTPAKHELSVKFAEERGLPLLKH 199
            :|.|||:.|.::.||...:..:....:..:|:.||:..|||..|......|..|||:.||...::
Mouse   243 VAAFIFIHRKWKDDKSHFEDMIDYFCAIHEPLQLLIFPEGTDLTENNKARSNDFAEKNGLQKYEY 307

  Fly   200 HLIPRTKGFTTSLPTMR--GICPAIYDINLAFKKNAEPKPTMLSQLNGEPVEPYMYIRRVPLDVV 262
            .|.|||.|||..:..:|  ....|::||.:|:..|. |:......|...|.|.:.:::|.|.|.:
Mouse   308 VLHPRTTGFTFVVDRLREGKNLDAVHDITVAYPYNI-PQTEKHLLLGDFPKEIHFHVQRYPADSL 371

  Fly   263 PDDEKEAAAWMQDFFAEKDKIIDSFHETGSFFKNSGVKEVP--EKIYKPRLSTLLNFLGWATF-A 324
            |..:::...|....:.||::.:.||::....|..:|...||  :...:..:..||:.:.||.| :
Mouse   372 PTSKEDLQLWCHRRWEEKEERLRSFYQGEKNFHFTGQSTVPPCKSELRVLVVKLLSIVYWALFCS 436

  Fly   325 VLCILHYLVTSLVAGNWFGFITVLSILGGFYSLMEYAVNASKISKASAY 373
            .:|:|.||.:.:   .|:..|:::     |:.|.|......:|.:.:.|
Mouse   437 AMCLLIYLYSPV---RWYFIISIV-----FFVLQERIFGGLEIIELACY 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Agpat4NP_001261942.1 PLN02380 12..366 CDD:178006 93/364 (26%)
LPLAT_LCLAT1-like 58..255 CDD:153252 57/198 (29%)
Acyltransf_C 243..320 CDD:292694 18/78 (23%)
Lclat1XP_036016461.1 LPLAT_LCLAT1-like 171..364 CDD:153252 57/198 (29%)
Acyltransf_C 349..422 CDD:406475 16/72 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S3011
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D959325at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_102498
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3473
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.700

Return to query results.
Submit another query.