DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Agpat4 and acl-9

DIOPT Version :9

Sequence 1:NP_001261942.1 Gene:Agpat4 / 39819 FlyBaseID:FBgn0036622 Length:380 Species:Drosophila melanogaster
Sequence 2:NP_504644.1 Gene:acl-9 / 179032 WormBaseID:WBGene00022646 Length:399 Species:Caenorhabditis elegans


Alignment Length:304 Identity:82/304 - (26%)
Similarity:140/304 - (46%) Gaps:36/304 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 SHLRG--LGRLLIAVTFFTCGFFVNIGQLLLILLVRPFDKKLSRSLAYYLHYSFYCILVCVAEWY 64
            :.|:|  .|..::...||  |....:..|:::|.::|   :|.|.:...|...:..:...:..:.
 Worm    18 TRLKGWFFGAAMLLSAFF--GVLYIVTPLVVLLFLKP---RLWRQMLDRLVGIWVIMPGALCNYI 77

  Fly    65 AGSKLRVYIDPQDEQKFFG-KEHGLLLMNHTYEIDWLTAWMITDKLGNLGGT--KAYAKKMLRYV 126
            .|:.:|:..|      |.. :|..|::|||...:|||..|....|:.....|  |...|.||:||
 Worm    78 FGANIRIKGD------FINHEEPALIIMNHRTRLDWLFFWNALYKMDPWLCTTEKISLKGMLKYV 136

  Fly   127 PVLGWVWWMAEFIFLDRNFEKDKVVIKTQLKEVFSY----PDPVWLLLNAEGTRFTPAKHELSVK 187
            |..||....|.:|||||:|:.|    ||:|..:.:|    .....|||..|||...|...|.|..
 Worm   137 PGAGWAMQAASYIFLDRSFDTD----KTKLDNILNYYAETEYKYQLLLFPEGTDKCPKATERSRI 197

  Fly   188 FAEERGLPLLKHHLIPRTKGFTTSLPTMR--GICPAIYDINLAFKKNAEPKPTMLSQL----NGE 246
            .:|::||...::.|.||..||...:..||  .....|||:::.|     ....:.|:|    :|.
 Worm   198 HSEKKGLVHYQYVLHPRVTGFVHIVQAMRRANNIKYIYDVSIGF-----GDAIVQSELDIFAHGV 257

  Fly   247 -PVEPYMYIRRVPLDVVPDDEKEAAAWMQDFFAEKDKIIDSFHE 289
             |.|.:..:.:.|::.:|..::....|:.:.:..|::.:..|:|
 Worm   258 CPKEVFYQVIKYPIEAIPQTDEALGQWLVNLWRNKEEKLKRFYE 301

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Agpat4NP_001261942.1 PLN02380 12..366 CDD:178006 79/292 (27%)
LPLAT_LCLAT1-like 58..255 CDD:153252 64/210 (30%)
Acyltransf_C 243..320 CDD:292694 10/52 (19%)
acl-9NP_504644.1 LPLAT_LCLAT1-like 72..264 CDD:153252 64/206 (31%)
Acyltransf_C 258..>301 CDD:374349 7/42 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 69 1.000 Domainoid score I6285
eggNOG 1 0.900 - - E1_COG0204
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 109 1.000 Inparanoid score I3462
Isobase 1 0.950 - 0 Normalized mean entropy S3011
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D959325at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm4847
orthoMCL 1 0.900 - - OOG6_102498
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3473
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.750

Return to query results.
Submit another query.