DRSC/TRiP Functional Genomics Resources

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Protein Alignment roq and rnf182

DIOPT Version :10

Sequence 1:NP_648886.1 Gene:roq / 39818 FlyBaseID:FBgn0036621 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_001038816.2 Gene:rnf182 / 751631 ZFINID:ZDB-GENE-060825-49 Length:249 Species:Danio rerio


Alignment Length:143 Identity:33/143 - (23%)
Similarity:53/143 - (37%) Gaps:49/143 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 TDFLNCPICCNEFAASQRCPVSLGCGHTICKLCLTTLYNRQ--------CPFDQTVIV---SDID 62
            |:.|.|.||...::.|.|.|..|.|.|.:|..||..:::..        |||.:.:..   .|:|
Zfish    16 TEELECKICYCAYSLSSRRPKVLKCCHCLCAKCLAKIHDLGESSPNAVICPFCRYITELPREDVD 80

  Fly    63 NLPINHALLQLVKDSELLELAPPPPSVQKLEPEHLKCYQLGQRCIEELALHLKSFLNLNGN-GNL 126
            :||..:.|:..:                                   |:..::...||..| |.:
Zfish    81 SLPDEYNLVSAL-----------------------------------LSFQMRKSHNLQDNQGEI 110

  Fly   127 LTRPMLRKLVTLV 139
            |..|  |:|.:||
Zfish   111 LLSP--RRLTSLV 121

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roqNP_648886.1 rad18 2..>95 CDD:273165 22/96 (23%)
mRING-HC-C3HC3D_Roquin 11..54 CDD:438300 16/50 (32%)
ROQ_II 269..324 CDD:436456
zf-CCCH 418..444 CDD:459885
rnf182NP_001038816.2 RING-HC_RNF182 18..72 CDD:438217 16/53 (30%)
Blue background indicates that the domain is not in the aligned region.

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