DRSC/TRiP Functional Genomics Resources

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Protein Alignment roq and Rnf224

DIOPT Version :10

Sequence 1:NP_648886.1 Gene:roq / 39818 FlyBaseID:FBgn0036621 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_001028582.1 Gene:Rnf224 / 329360 MGIID:2685603 Length:156 Species:Mus musculus


Alignment Length:92 Identity:26/92 - (28%)
Similarity:37/92 - (40%) Gaps:19/92 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 NCPICCNEFAASQRCPVSLGCGHTICKLCLTTL----YNR------QCPFDQTVIVSDIDNLPIN 67
            :|.||.:.:..|...|..|.||||.|:.|:..|    :.:      ||.....|....:..|.::
Mouse    22 DCIICYSAYDLSVHLPRRLYCGHTFCQACMQRLDMPAHEQHWIPCPQCRQSTPVPRGGVTMLDLD 86

  Fly    68 HALLQLVKDSELLELAPPPPSVQKLEP 94
            .|....||       |...||  |:||
Mouse    87 LAAFLAVK-------AEREPS--KIEP 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roqNP_648886.1 rad18 2..>95 CDD:273165 26/92 (28%)
mRING-HC-C3HC3D_Roquin 11..54 CDD:438300 15/50 (30%)
ROQ_II 269..324 CDD:436456
zf-CCCH 418..444 CDD:459885
Rnf224NP_001028582.1 RING-HC_RNF224 22..79 CDD:438227 16/56 (29%)
Blue background indicates that the domain is not in the aligned region.

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