DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment roq and Rnf224

DIOPT Version :9

Sequence 1:NP_001261940.1 Gene:roq / 39818 FlyBaseID:FBgn0036621 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_001028582.1 Gene:Rnf224 / 329360 MGIID:2685603 Length:156 Species:Mus musculus


Alignment Length:92 Identity:26/92 - (28%)
Similarity:37/92 - (40%) Gaps:19/92 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 NCPICCNEFAASQRCPVSLGCGHTICKLCLTTL----YNR------QCPFDQTVIVSDIDNLPIN 67
            :|.||.:.:..|...|..|.||||.|:.|:..|    :.:      ||.....|....:..|.::
Mouse    22 DCIICYSAYDLSVHLPRRLYCGHTFCQACMQRLDMPAHEQHWIPCPQCRQSTPVPRGGVTMLDLD 86

  Fly    68 HALLQLVKDSELLELAPPPPSVQKLEP 94
            .|....||       |...||  |:||
Mouse    87 LAAFLAVK-------AEREPS--KIEP 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roqNP_001261940.1 zf-RING_5 13..55 CDD:291308 15/51 (29%)
zf-CCCH 418..444 CDD:279036
Rnf224NP_001028582.1 RING 22..73 CDD:238093 15/50 (30%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167846933
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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