DRSC/TRiP Functional Genomics Resources

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Protein Alignment roq and Rnf182

DIOPT Version :10

Sequence 1:NP_648886.1 Gene:roq / 39818 FlyBaseID:FBgn0036621 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_899027.1 Gene:Rnf182 / 328234 MGIID:3045355 Length:247 Species:Mus musculus


Alignment Length:218 Identity:50/218 - (22%)
Similarity:77/218 - (35%) Gaps:79/218 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 PIQAPS---WTDFLNCPICCNEFAASQRCPVSLGCGHTICKLCLTTLYN--------RQCPF--D 53
            |::.|:   .:|.|.|.||.|.:...||.|..|.|.|.:|..||..:.:        ..|||  .
Mouse     5 PLEEPAESQASDELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCPFCRF 69

  Fly    54 QTVIVSD-IDNLPINHALLQLVKDSELLELAPPPPSVQKLEPEHLKCYQLGQRCIEELALHLKSF 117
            :|.:..| :.:||.::.:|                       .:|.|...|::|:.|        
Mouse    70 ETCLPDDEVSSLPDDNNIL-----------------------VNLTCGGKGKKCLPE-------- 103

  Fly   118 LNLNGNGNLLTRPMLRKLV----TLVNCQLMEEEGRVRALRAARSLGERTVTELILQHQNPQQLS 178
               |....|||...|..||    |..||.:                    :|.:.:|.::...||
Mouse   104 ---NPTELLLTPKRLASLVSPSHTSSNCLV--------------------ITIMEVQRESSPSLS 145

  Fly   179 SNLWAAVRTRGCQFLGPAMQEEV 201
            |       |...:|..||..:.|
Mouse   146 S-------TPVVEFYRPASFDSV 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roqNP_648886.1 rad18 2..>95 CDD:273165 25/106 (24%)
mRING-HC-C3HC3D_Roquin 11..54 CDD:438300 17/52 (33%)
ROQ_II 269..324 CDD:436456
zf-CCCH 418..444 CDD:459885
Rnf182NP_899027.1 RING-HC_RNF182 17..71 CDD:438217 17/53 (32%)
Blue background indicates that the domain is not in the aligned region.

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