DRSC/TRiP Functional Genomics Resources

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Protein Alignment roq and RNF182

DIOPT Version :9

Sequence 1:NP_001261940.1 Gene:roq / 39818 FlyBaseID:FBgn0036621 Length:819 Species:Drosophila melanogaster
Sequence 2:NP_001158504.1 Gene:RNF182 / 221687 HGNCID:28522 Length:247 Species:Homo sapiens


Alignment Length:222 Identity:52/222 - (23%)
Similarity:75/222 - (33%) Gaps:82/222 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPIQAPSWT------DFLNCPICCNEFAASQRCPVSLGCGHTICKLCLTTLYN--------RQCP 51
            |..|.|..|      |.|.|.||.|.:...||.|..|.|.|.:|..||..:.:        ..||
Human     1 MASQPPEDTAESQASDELECKICYNRYNLKQRKPKVLECCHRVCAKCLYKIIDFGDSPQGVIVCP 65

  Fly    52 F--DQTVIVSD-IDNLPINHALLQLVKDSELLELAPPPPSVQKLEPEHLKCYQLGQRCIEELALH 113
            |  .:|.:..| :.:||.::.:|                       .:|.|...|::|:.|    
Human    66 FCRFETCLPDDEVSSLPDDNNIL-----------------------VNLTCGGKGKKCLPE---- 103

  Fly   114 LKSFLNLNGNGNLLTRPMLRKLV----TLVNCQLMEEEGRVRALRAARSLGERTVTELILQHQNP 174
                   |....|||...|..||    |..||.:                    :|.:.:|.::.
Human   104 -------NPTELLLTPKRLASLVSPSHTSSNCLV--------------------ITIMEVQRESS 141

  Fly   175 QQLSSNLWAAVRTRGCQFLGPAMQEEV 201
            ..|||       |...:|..||..:.|
Human   142 PSLSS-------TPVVEFYRPASFDSV 161

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roqNP_001261940.1 zf-RING_5 13..55 CDD:291308 16/51 (31%)
zf-CCCH 418..444 CDD:279036
RNF182NP_001158504.1 RING-HC_RNF182 19..69 CDD:319469 16/49 (33%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165156528
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.930

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