DRSC/TRiP Functional Genomics Resources

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Protein Alignment roq and rc3h1

DIOPT Version :9

Sequence 1:NP_001261940.1 Gene:roq / 39818 FlyBaseID:FBgn0036621 Length:819 Species:Drosophila melanogaster
Sequence 2:XP_002931481.1 Gene:rc3h1 / 100485305 XenbaseID:XB-GENE-5864196 Length:1123 Species:Xenopus tropicalis


Alignment Length:682 Identity:354/682 - (51%)
Similarity:431/682 - (63%) Gaps:101/682 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MPIQAPSWTDFLNCPICCNEFAASQRCPVSLGCGHTICKLCLTTLYNRQCPFDQTVIVSDIDNLP 65
            ||:|||.|||||:||||...|..:.|.|:|||||||:||:||..|:.:.||||||.|.:||:.||
 Frog     1 MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTDIELLP 65

  Fly    66 INHALLQLVKDSELLELAPPPPSVQKLE------PEHLKCYQLGQRCIEELALHLKSFLNLNGNG 124
            :|.||||||        ....|..|::.      .|..|.|:..::|:|||||:||......|.|
 Frog    66 VNSALLQLV--------GAQVPEQQQITLCGGCGAEDTKHYEEARKCVEELALYLKPLSTARGVG 122

  Fly   125 ------NLLTRPMLRKLVTLVNCQLMEEEGRVRALRAARSLGERTVTELILQHQNPQQLSSNLWA 183
                  ::|:|||.|||||||:|||:|||||:||:||||||||||||||||||||||||||||||
 Frog   123 LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLSSNLWA 187

  Fly   184 AVRTRGCQFLGPAMQEEVLKLVLLALEEGSALSRKVLVMFVVQRLEPKFPQASKTSIGHVVQLLY 248
            |||.|||||||||||||.|||||||||:||||||||||:||||||||:|||||||||||||||||
 Frog   188 AVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKTSIGHVVQLLY 252

  Fly   249 RASCFKVSKREADSSLMQLKEEFRTYDALRREHDAQIVQIATEAGLRIAPEQWSSLLYGDVMHKS 313
            |||||||:||:.||||||||||||||:|||||||:||||||.||||||||:|||||||||..|||
 Frog   253 RASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAPDQWSSLLYGDQSHKS 317

  Fly   314 HMQSIIDKLQTPSSFAQSVQELVIALQRTSDPAKLSSLHHHLKYLANIDPCAEVAP--WSVLAEA 376
            ||||||||||||:|||||||||.||||||.|||.|:.|..||:.||||||..:..|  |..|.:.
 Frog   318 HMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELLANIDPSPDAPPPTWEQLEDG 382

  Fly   377 LDAVRHSVVGLVNFLQHHGVRKAQDGISGGGSGGTTNSNP----KYKISLCRDLNVRRVCPRGSS 437
            |.||:..|.|||:::|:|..:            ||....|    |||..:|||:..|..||||:|
 Frog   383 LVAVKTVVHGLVDYIQNHSKK------------GTDQQQPPQHSKYKTYMCRDMKQRGGCPRGAS 435

  Fly   438 CTFAHSQEEVERYRARNRGKHMKTPLALQGPPAVGVGAIKK---PLGEQEGPPLGNMPPMLPMSP 499
            |||||||||:|::|..|:....:.||      :..:|.:.:   |:|..:..|: ::||..|   
 Frog   436 CTFAHSQEELEKFRKMNKRLVPRRPL------SASLGQLNEVGLPIGAPDEGPM-DLPPRKP--- 490

  Fly   500 MHYMGSPRGYLDPSLGLSPGGGL-PPSHHSPITRLIVPSRYDSRFSGFGGGTPR----IPSPREY 559
               .|.|.       |:.||..| ..|..|....::...:.|...|...|..|.    :|. ...
 Frog   491 ---SGLPN-------GIVPGTQLISRSTDSGFESVLKQVKLDQLSSSAPGSPPELLDSVPK-ASM 544

  Fly   560 QANPVAPTQRNANPPNFSVNSNLHKGYMLPAS----------------GGDVFHL-----ANPWE 603
            .|.||     ||:|....|:|::..   ||.|                ..|.|:.     ..|::
 Frog   545 SALPV-----NAHPAASRVSSDMPP---LPVSKPIQMVPRGSQIYAPPPADTFYQECRGGGPPFD 601

  Fly   604 QAYLAQ-QQHPPQHPQ----QQQPPSSKPNPS 630
            .|..|| ..:|||..|    ..:||.:...|:
 Frog   602 AAPYAQGVYYPPQSSQCVSRFVRPPPAATEPA 633

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
roqNP_001261940.1 zf-RING_5 13..55 CDD:291308 23/41 (56%)
zf-CCCH 418..444 CDD:279036 16/25 (64%)
rc3h1XP_002931481.1 mRING-HC-C3HC3D_Roquin 11..54 CDD:319552 24/42 (57%)
modified RING-HC finger (C3HC3D-type) 14..53 CDD:319552 21/38 (55%)
ROQ_II 273..328 CDD:375812 48/54 (89%)
zf-CCCH 416..441 CDD:366217 15/24 (63%)
PHA03247 <525..785 CDD:223021 28/118 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 300 1.000 Domainoid score I1416
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0004107
OrthoInspector 1 1.000 - - oto103122
Panther 1 1.100 - - O PTHR13139
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3350
SonicParanoid 1 1.000 - - X2848
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
88.040

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