Sequence 1: | NP_001261940.1 | Gene: | roq / 39818 | FlyBaseID: | FBgn0036621 | Length: | 819 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_002931481.1 | Gene: | rc3h1 / 100485305 | XenbaseID: | XB-GENE-5864196 | Length: | 1123 | Species: | Xenopus tropicalis |
Alignment Length: | 682 | Identity: | 354/682 - (51%) |
---|---|---|---|
Similarity: | 431/682 - (63%) | Gaps: | 101/682 - (14%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MPIQAPSWTDFLNCPICCNEFAASQRCPVSLGCGHTICKLCLTTLYNRQCPFDQTVIVSDIDNLP 65
Fly 66 INHALLQLVKDSELLELAPPPPSVQKLE------PEHLKCYQLGQRCIEELALHLKSFLNLNGNG 124
Fly 125 ------NLLTRPMLRKLVTLVNCQLMEEEGRVRALRAARSLGERTVTELILQHQNPQQLSSNLWA 183
Fly 184 AVRTRGCQFLGPAMQEEVLKLVLLALEEGSALSRKVLVMFVVQRLEPKFPQASKTSIGHVVQLLY 248
Fly 249 RASCFKVSKREADSSLMQLKEEFRTYDALRREHDAQIVQIATEAGLRIAPEQWSSLLYGDVMHKS 313
Fly 314 HMQSIIDKLQTPSSFAQSVQELVIALQRTSDPAKLSSLHHHLKYLANIDPCAEVAP--WSVLAEA 376
Fly 377 LDAVRHSVVGLVNFLQHHGVRKAQDGISGGGSGGTTNSNP----KYKISLCRDLNVRRVCPRGSS 437
Fly 438 CTFAHSQEEVERYRARNRGKHMKTPLALQGPPAVGVGAIKK---PLGEQEGPPLGNMPPMLPMSP 499
Fly 500 MHYMGSPRGYLDPSLGLSPGGGL-PPSHHSPITRLIVPSRYDSRFSGFGGGTPR----IPSPREY 559
Fly 560 QANPVAPTQRNANPPNFSVNSNLHKGYMLPAS----------------GGDVFHL-----ANPWE 603
Fly 604 QAYLAQ-QQHPPQHPQ----QQQPPSSKPNPS 630 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
roq | NP_001261940.1 | zf-RING_5 | 13..55 | CDD:291308 | 23/41 (56%) |
zf-CCCH | 418..444 | CDD:279036 | 16/25 (64%) | ||
rc3h1 | XP_002931481.1 | mRING-HC-C3HC3D_Roquin | 11..54 | CDD:319552 | 24/42 (57%) |
modified RING-HC finger (C3HC3D-type) | 14..53 | CDD:319552 | 21/38 (55%) | ||
ROQ_II | 273..328 | CDD:375812 | 48/54 (89%) | ||
zf-CCCH | 416..441 | CDD:366217 | 15/24 (63%) | ||
PHA03247 | <525..785 | CDD:223021 | 28/118 (24%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 300 | 1.000 | Domainoid score | I1416 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 0 | 0.000 | Not matched by this tool. | |||
OrthoFinder | 1 | 1.000 | - | - | FOG0004107 | |
OrthoInspector | 1 | 1.000 | - | - | oto103122 | |
Panther | 1 | 1.100 | - | - | O | PTHR13139 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R3350 |
SonicParanoid | 1 | 1.000 | - | - | X2848 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
8 | 8.040 |