DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdh and hpgd

DIOPT Version :9

Sequence 1:NP_524105.2 Gene:Pdh / 39812 FlyBaseID:FBgn0011693 Length:278 Species:Drosophila melanogaster
Sequence 2:NP_001313470.1 Gene:hpgd / 565975 ZFINID:ZDB-GENE-080728-2 Length:261 Species:Danio rerio


Alignment Length:246 Identity:80/246 - (32%)
Similarity:131/246 - (53%) Gaps:7/246 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 MSFRGKNAVVTGGAGGIGLQVSKQLLAAGAAKVAIIDLQDNLEEFVK--LRAAHPTQSVMIIKMD 80
            ||..||.|:|||||.|||..|.::||..| ||||::||..::.|..|  |.......:.:.|:.|
Zfish     1 MSLHGKTALVTGGAQGIGRAVVEELLQNG-AKVALVDLNQSVGEECKSDLDDQFGEDNCIFIQCD 64

  Fly    81 VANKKGVEATYEEIAKTFGNIDIVVNVAGIFNDKDVQRTLLVNLGGIINSTLSALPYMGKDNGGK 145
            |.:.:.:...:......||.:|||:|.|||.|:|:.::|:.|||..:|..|..||.:|.|:.|.:
Zfish    65 VTDGEKLGDAFRNTVDRFGRLDIVINNAGINNEKNWEKTIEVNLTSVIKGTYLALEHMSKEYGKQ 129

  Fly   146 GGIVVNMSSVVGLDPMFIIPVYGATKAGIINFTRCLANEKYYQRSGIKFVTVCPGATMTDMFTNF 210
            ||.::|:||:.........|||.|||.|:|.|:|.:|:.......|::...:||....|.:....
Zfish   130 GGAIINVSSMAAFLHSPHQPVYTATKYGVIGFSRAMADASEQGNYGVRINALCPAFVDTQLLQTV 194

  Fly   211 TEKII---FPETSDETYRILDRLNKQSAADVSRCILNVL-EKDKNGAVYVI 257
            ..:..   |.:..|:..:.:|:......:.::..:|.:: ::..||||..|
Zfish   195 EHEETMGKFVKYKDDFKQRMDKYGVLKPSLIAEGMLRLITDESLNGAVMKI 245

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdhNP_524105.2 NADB_Rossmann 23..259 CDD:304358 77/241 (32%)
adh_short 23..214 CDD:278532 68/192 (35%)
hpgdNP_001313470.1 ADH_SDR_c_like 6..254 CDD:187584 77/241 (32%)
adh_short 6..198 CDD:278532 68/192 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170585842
Domainoid 1 1.000 134 1.000 Domainoid score I4954
eggNOG 1 0.900 - - E2759_KOG4169
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 136 1.000 Inparanoid score I4534
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1053465at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm6395
orthoMCL 1 0.900 - - OOG6_100916
Panther 1 1.100 - - O PTHR44229
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R7321
SonicParanoid 1 1.000 - - X2961
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1312.790

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