DRSC/TRiP Functional Genomics Resources

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Protein Alignment Golgin104 and golga1

DIOPT Version :9

Sequence 1:NP_648879.1 Gene:Golgin104 / 39810 FlyBaseID:FBgn0036614 Length:776 Species:Drosophila melanogaster
Sequence 2:NP_957132.2 Gene:golga1 / 393811 ZFINID:ZDB-GENE-040426-1237 Length:862 Species:Danio rerio


Alignment Length:855 Identity:188/855 - (21%)
Similarity:334/855 - (39%) Gaps:245/855 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly     6 ATPPAEMENPASV-----------------ENGDSGRD--SNHIEGK--AIGDVDMKADSIEQQL 49
            ||.|.....|.|:                 .:|.|.||  |:.|:.:  .|..::.|.....:||
Zfish    14 ATAPRSGRIPRSMSKESITSVGADSGDDFASDGSSSRDDFSSQIQRRNDQIRKLEAKLSDYAEQL 78

  Fly    50 -------EESDVKTESNGD----QLTDQDEG-----------------KIEQDL--KAAVLEQVP 84
                   |:.::..|...|    :|.||:|.                 |.:|:.  |.|.|||..
Zfish    79 RLMQKTKEKLEIALEKYQDSSMRKLQDQNESFQTNRAKMAEAMSLALEKKDQEWMEKLASLEQEK 143

  Fly    85 IE---------EEGLSLRFKDLQAQEKVKELQQTPSQPPQNDILSHVHCLAQLEEQRRNYEQQL- 139
            :.         |:.|||    .|.::.:.||:..    .|.::....|.|.:.|||....|::| 
Zfish   144 LSLTSRLDEMTEQSLSL----FQKRDDLDELEGF----QQQELAKVKHMLLRREEQLNQREKELK 200

  Fly   140 ---EQLRTSNVQKDNMITLIQRENAI--LGKE-KQACRKEMEMANKEKEATVIKFAMKEKLLIDA 198
               |:|.|:.      :||.:.::.:  ||:| ::.||...::.           |.:::||   
Zfish   201 LRGEELNTAR------LTLGKTQDKLYELGEEHEEICRTNSQLQ-----------AQRDELL--- 245

  Fly   199 KKEKEAVEKQLAEAKKEVKNVSTRFLAVSEEKSRMTYIIDEKCNEVRKYQRECEKYKTEMGHLES 263
             .|||..|:::.:.::..:.:......|||              :.:|.|...|..:..|.||:|
Zfish   246 -SEKEEAERRVVDLERREQELQQLIQQVSE--------------DFQKAQSNAEALEKSMEHLQS 295

  Fly   264 KLKYHINKLNIETEAK----AVVERKLEEEKNAPNKLEEKANEKLKMEFEANTILLKHEITSKTE 324
            :   | |||.::.|..    ||.|   ||.:...:.|:||| ..|:...|||        .|:.|
Zfish   296 E---H-NKLKLQHEQHKNKVAVTE---EERERILSDLQEKA-ASLERRLEAN--------FSQDE 344

  Fly   325 ALDKLTKEQQKLSAANKELQNQLQEITTEHN--------QLTEEYNRLRELHNSVEGSYSDELLN 381
            .|.:|.||:..|....:|.:.:|.:..|.|.        |::.:...:.:|...|:  :.|:...
Zfish   345 HLQELLKEKSSLEQRLEEARGELLQEKTSHTTAVSSLEAQVSRQNASIIDLQTLVK--HKDDSSK 407

  Fly   382 SAKLR--GQLEELQLLRTQNTINEEKLMDQQKRVQKLEALVQDNETDLEQLKVKRQELLTINKEM 444
            :.:.|  .|:.:|          |::|.|..::::.|:..::|::...::|::          |.
Zfish   408 AYRERTDAQISDL----------EQRLADCAEKMKSLQQQLKDSQMHTDKLQM----------EW 452

  Fly   445 SELIVQLQNDICLAKAKAQGLD----AENKLLKQEKLTYDTKYNQLEQQLSLEASEKNEERLLLA 505
            ||...:||..:  :..:.:||:    .|.:||..:: ..:|:.|:.:..|.|...|||.  ||.:
Zfish   453 SEERERLQQQV--STQRQRGLEKTARLEEELLAVQR-DRETEANKYQDNLRLLEEEKNS--LLRS 512

  Fly   506 KHLSEKTKMYELTKQKLEDVQGDFEATQHKHATVLK----------ELHRELNKYKRGITEPKTP 560
            |..::.|  .|....:||..:.:..:.|.....:.|          ||.::::|....:.:.:..
Zfish   513 KGETDST--VESLTAELEQSRAEMSSRQTVSVEIAKALEETRKQREELQQQVSKMTESLVKAEQE 575

  Fly   561 ISYCSN----CQQAINGYPTENPQQRSHSRSSSHGSMHSGSRRASESSESETVASSATTVQQPPP 621
            :|..|.    .::.:|....|....|| |.||......|   |..|:.|.|...:|..|      
Zfish   576 VSRLSQDLGVKEEEVNALKEELQAARS-SLSSLQAECES---RRLEAEEKEREHNSQLT------ 630

  Fly   622 QQDLQAVPSKKVLVERILRLQQATARQTERIEFLENHTAALVAEVQKKSKVVQHYMLRDQTAGAL 686
                              .|||...|||:::...::..:.|.:||...:..........:..|.:
Zfish   631 ------------------SLQQEVLRQTQQLSSYQSRVSDLESEVLSLTAHSHADECEGEQNGTV 677

  Fly   687 TTSRSDQNKSELVKYGNGIMAAIYGGGSSKTGGENKAMSLELSLEINKKLQ------AVLEDTLL 745
            |.|..||    |.|.                   ||.:..:|: |.||.::      |.|:.||.
Zfish   678 TVSDLDQ----LQKV-------------------NKDLEQQLA-EKNKTIKQLQQRLAELKRTLQ 718

  Fly   746 KNITLKENLD 755
            |.:.||.:.|
Zfish   719 KELKLKPDPD 728

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Golgin104NP_648879.1 LMBR1 <328..>430 CDD:282625 20/111 (18%)
golga1NP_957132.2 Filament 416..647 CDD:278467 59/285 (21%)
TTKRSYEDQ <453..643 CDD:287216 50/224 (22%)
MreC <679..>732 CDD:302802 19/74 (26%)
GRIP 789..830 CDD:279767
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0992
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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